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AATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGgtttcgacactactagtctgtcagctgttgcgatgcattgttttctaatatctactggttattggcaacaaatttctaatgttcaattgtgcgaacataa...
species | Oryza sativa |
transcript | LOC_Os07g22400.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: AACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAG TTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTAEST: gi|38470072|gb|CF954203.1|CF954203
genomic: AACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGgtttcgacac ... tacttgacagTTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTA
EST: AACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAG TTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTAEST: gi|27921211|gb|CB097019.1|CB097019
genomic: AACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGgtttcgacac ... tacttgacagTTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTA
EST: AACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAG TTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTAEST: gi|88846121|gb|CI372889.1|CI372889
genomic: AACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGgtttcgacac ... tacttgacagTTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTA
EST: AACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAG TTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTAEST: gi|88906377|gb|CI375449.1|CI375449
genomic: AACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGgtttcgacac ... tacttgacagTTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTA
EST: AACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAG TTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTA
genomic: AACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGgtttcgacac ... tacttgacagTTCGTATCAAGATTTCATCCTTGCTGCTAATGATATGGAGAACAACAATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAAAAGTCAGTCCATCCAAATGCGGAATTTCAGgtttcgacactactagtctgtcagctgttgcgatgcattgttttctaatatctactggttattggcaacaaatttctaatgttcaattgtgcgaacataa
- - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - GCTGCT