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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGTACGTTCCCTTGAGCGTCTTTTACAGTATGGCGAGCAGAATATTAGAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAGgtaacagttctttttgtatactagtagcattaaatgtgtgctatcttcatgccgttgcacacaatcattcaattgaattgttgagaaagaactatttaat...

Basic information

species Oryza sativa
transcript LOC_Os06g48640.2
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88728383|gb|CI751893.1|CI751893
EST:     GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAG                         GTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
genomic: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAGgtaacagttc ... tgtcaattagGTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
EST: gi|4714418|gb|AU058385.1|AU058385
EST:     GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAG                         GTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
genomic: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAGgtaacagttc ... tgtcaattagGTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
EST: gi|29614662|gb|CB619675.1|CB619675
EST:     GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAG                         GTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
genomic: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAGgtaacagttc ... tgtcaattagGTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
EST: gi|4714419|gb|AU058386.1|AU058386
EST:     GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAG                         GTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA
genomic: GAAGGGCGGTTCCTCTAGCTCTGGGTTTGCTTTGCATATCCAATCCAAAGgtaacagttc ... tgtcaattagGTAAATGTTATGGACACAATGAGTAGACTGAGCCATGATGCAGATGCGGAA