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ATGCAAGATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacagaaaacttatcttgttccataataagtattttgcactttcatttctctctgttgcatatgctatttttgagcaagaaacaattcacaccta...
species | Oryza sativa |
transcript | LOC_Os06g28060.2 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|86437224|gb|CI118946.1|CI118946
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|66920553|gb|CX107401.1|CX107401
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|86437904|gb|CI119824.1|CI119824
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|29687744|gb|CB684019.1|CB684019
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|86892642|gb|CI312037.1|CI312037
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: ATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|86597685|gb|CI274676.1|CI274676
genomic: ATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGT-GCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|86479104|gb|CI121737.1|CI121737
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|38474302|gb|CF958434.1|CF958434
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|58665464|gb|CK054150.1|CK054150
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|86482331|gb|CI124964.1|CI124964
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|86596961|gb|CI270757.1|CI270757
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|29626226|gb|CB631237.1|CB631237
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|88472952|gb|CI410223.1|CI410223
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAGEST: gi|29687745|gb|CB684020.1|CB684020
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
EST: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGA GTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
genomic: GATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacag ... ttttttgtagGTGCTCTAAACTTGAGGCATCAGAGCAGCAACTCTTATGTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCAAGATGAAAGGATCAGACATTTAATCTGTCAGAAGAAGGTGCTAAAGGATGAgtgagtacagaaaacttatcttgttccataataagtattttgcactttcatttctctctgttgcatatgctatttttgagcaagaaacaattcacaccta
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - AGGATG