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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGAAGGGTAGTGGCAGTAAAACAGCTATCTCAGACATCTAATCAAGGGAAACAACAATTTGCGACTGAAATAGAAACTATATCTCGAGTGCAACACCgtaatcttgtgaagttgtatggttgctgccttgaaggcaaacatccactgctggttttatgagtacttggagaatggaagccttgataaagcactatttggtacaagttatttcagtttgatatggctgagattctgtgaactcagatttattattagtctatagagagctaaaaagcttaacccttcatttgcag

Basic information

species Oryza sativa
transcript LOC_Os04g52630.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G126858_T01 (Zea mays), 5'ss of exon 19
GATGGAAGGGTAGTGGCAGTAAAACAGCTATCTCAGACATCTAATCAAGGGAAACAACAATTTGCGACTGAAATAGAAACTATATCTCGAGTGCAACACCgtaatcttgtgaagttgtatggttgctgccttgaaggcaaacatccactgctggttttatgagtacttggagaatggaagccttgataaagcactatttggtacaagttatttcagtttgatatggctgagattctgtgaactcagatttat-tattagtctatagagagctaaaaagcttaacccttcatttgcag
                                                                                                   ||||||||||||||||||| |||||  |||||||| || ||  | |||||  |||||| |||||||| |||||| ||||||||||||||||||| | |||||||  |   |||||| ||   | |  |          |   ||  || |  | ||| | |||   || | || ||| | | |    ||    |||||
---------------------------------------------------------------------------------------------------CGTAATCTTGTGAAGTTGTTTGGTTTTTGCCTTGAGGGAAATAAACCACTTTTGGTTT-ATGAGTACATGGAGAGTGGAAGCCTTGATAAAGCATTGTTTGgtatcaaccatttca-ttcagtttatccagcggcgactagtctaggactcttatataaatct---gacatctgaaatgttca----ttggcatgcag

upper sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G155837_T02 (Zea mays), 5'ss of exon 17
GATGGAAGGGTAGTGGCAGTAAAACAGCTATCTCAGACATCTAATCAAGGGAAACAACAATTTGCGACTGAAATAGAAACTATATCTCGAGTGCAACACCgtaatcttgtgaagttgtatggttgctgccttgaaggcaaacatccactgctggttttatgagtacttggagaatggaagccttgataaagcactatttggtacaagtt-atttcagtttgatatggctgagattctgtgaactcagatttattattagtctatagagagctaaaaagcttaaccctt-catttgcag
                                                                                                   ||||||||||||||||||||||||||||| |||||||| ||  | |||||| | |||| |||||||| | |||||||||||||||||||||||| | ||||||||||| | ||||||||||||||   | |  | |||  ||  |||| ||| ||||      ||| | ||   ||||  | |||  ||  ||||||||
---------------------------------------------------------------------------------------------------CGTAATCTTGTGAAGTTGTATGGTTGCTGTCTTGAAGGAAATAAACCACTGTTAGTTT-ATGAGTACCTAGAGAATGGAAGCCTTGATAAAGCATTGTTTGgtacaagctcatttcagtttgatacaacagtaactctaggagttcaggtttcttat------ataaacagt--aaaacttaaacatttatatttgcag

upper sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G031536_T01 (Zea mays), 5'ss of exon 6
GATGGAAGGGTAGTGGCAGTAAAACAGCTATCTCAGACATCTAATCAAGGGAAACAACAATTTGCGACTGAAATAGAAACTATATCTCGAGTGCAACACCgtaatcttgtgaagttgtatggttgctgccttgaaggcaaacatccactgctggttttatgagtacttggagaatggaagccttgataaagcactatttggtacaagtt-atttcagtttgatatggctgagattctgtgaactcagatttattattagtctatagagagctaaaaagcttaacccttcatttgcag
                                                                                                   |||||||||||||||||||| |||||||||||||| || ||  | |||||| |||||| |||||||  |||||||||||||||||||||||||| ||||||||||||| | |||||| ||  |     | |  | |||  ||  |||| |   |||  | | |||    ||                           
---------------------------------------------------------------------------------------------------CGTAATCTTGTGAAGTTGTACGGTTGCTGCCTTGAGGGAAATAAACCACTGTTGGTTT-ATGAGTATCTGGAGAATGGAAGCCTTGATAAAGCATTATTTGgtacaagctcatttcacttccacgcaacagtaactctaggagttcaggtaatttaaaattttatttgcag---------------------------