1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
GTTGGCGTTGTGGTTGGTGTGGCAGTTTTAGGTTTGGTAGCACTTGTTGGAATTTTTATGTGGAGACAGAAAAGGAGAAAACTGACACTGGAGCAACAAGgtacatggcacactatgctcacattgtatccttgaccaggcaaacaagaagttaataaattgatgttcctttttatgttcgcag
species | Oryza sativa |
transcript | LOC_Os04g52600.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: AATTTTTATGTGGAGACAGAAAAGGAGAAAACTGACACTGGAGCAACAAG AGCTATACAGTATTGTTGGAAGACCTAATGTATTCAGTTATAGTGAACTAAEST: gi|29679955|gb|CB676230.1|CB676230
genomic: AATTTTTATGTGGAGACAGAAAAGGAGAAAACTGACACTGGAGCAACAAGgtacatggca ... atgttcgcagAGCTATACAGTATTGTTGGAAGACCTAATGTATTCAGTTATAGTGAACTAA
EST: AATTTTTATGTGGAGACAGAAAAGGAGAAAACTGACACTGGAGCAACAAG AGCTATACAGTATTGTTGGAAGACCTAATGTATTCAGTTATAGTGAACTAAEST: gi|29640571|gb|CB645580.1|CB645580
genomic: AATTTTTATGTGGAGACAGAAAAGGAGAAAACTGACACTGGAGCAACAAGgtacatggca ... atgttcgcagAGCTATACAGTATTGTTGGAAGACCTAATGTATTCAGTTATAGTGAACTAA
EST: AATTTTTATGTGGAGACAGAAAAGGAGAAAACTGACACTGGAGCAACAAG AGCTATACAGTATTGTTGGAAGACCTAATGTATTCAGTTATAGTGAACTAAEST: gi|29680824|gb|CB677099.1|CB677099
genomic: AATTTTTATGTGGAGACAGAAAAGGAGAAAACTGACACTGGAGCAACAAGgtacatggca ... atgttcgcagAGCTATACAGTATTGTTGGAAGACCTAATGTATTCAGTTATAGTGAACTAA
EST: CAGAAAAGGAGAAAACTGACACTGGAGCAACAAG AGCTATACAGTATTGTTGGAAGACCTAATGTATTCAGTTATAGTGAACTAAEST: gi|29661052|gb|CB657327.1|CB657327
genomic: CAGAAAAGGAGAAAACTGACACTGGAGCAACAAGgtacatggca ... atgttcgcagAGCTATACAGTATTGTTGGAAGACCTAATGTATTCAGTTATAGTGAACTAA
EST: CAGAAAAGGAGAAAACTGACACTGGAGCAACAAG AGCTATACAGTATTGTTGGAAGACCTAATGTATTCAGTTATAGTGAACTAA
genomic: CAGAAAAGGAGAAAACTGACACTGGAGCAACAAGgtacatggca ... atgttcgcagAGCTATACAGTATTGTTGGAAGACCTAATGTATTCAGTTATAGTGAACTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGCGTTGTGGTTGGTGTGGCAGTTTTAGGTTTGGTAGCACTTGTTGGAATTTTTATGTGGAGACAGAAAAGGAGAAAACTGACACTGGAGCAACAAGgtacatggcacactatgctcacattgtatccttgaccaggcaaacaagaagttaataaattgatgttcctttttatgttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA