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GAACCCAACACTCAGAAGTCATTGCATGATACTGCTGACAAGGATCCTACAAAAATGAAGAAGgtatatttgtgtgattaaatgtgttcgccaacttctttccatatgcatgtctaaactactccctccgtttcataatgtaagtcattctagcattgcctat...
species | Oryza sativa |
transcript | LOC_Os04g37960.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: CAAAAATGAAGAAG GTTGTTGCTGGATCCCATCCCCACCCTGCAAACATTGGTGAATTGTTTTCTEST: gi|66914957|gb|CX101805.1|CX101805
genomic: CAAAAATGAAGAAGgtatatttgt ... cactctccagGTTGTTGCTGGATCCCATCCCCACCCTGCAAACATTGGTGAATTGTTTTCT
EST: AGAAGTCATTGCATGATACTGCTGACAAGGATCCTACAAAAATGAAGAAG GTTGTTGCTGGATCCCATCCCCACCCTGCAAACATTGGTGAATTGTTTTCT
genomic: AGAAGTCATTGCATGATACTGCTGACAAGGATCCTACAAAAATGAAGAAGgtatatttgt ... cactctccagGTTGTTGCTGGATCCCATCCCCACCCTGCAAACATTGGTGAATTGTTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCCAACACTCAGAAGTCATTGCATGATACTGCTGACAAGGATCCTACAAAAATGAAGAAGgtatatttgtgtgattaaatgtgttcgccaacttctttccatatgcatgtctaaactactccctccgtttcataatgtaagtcattctagcattgcctat
- - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccg