1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
AGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGGgtatcttcagtctcctagatgtcctcatctatttgttcggcaatcttttgatatctatttatttttcag
species | Oryza sativa |
transcript | LOC_Os04g31190.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: GTTCTTGAACAGGCTCATAGG ACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGCEST: gi|89184146|gb|CI046711.1|CI046711
genomic: GTTCTTGAACAGGCTCATAGGgtatcttcag ... tatttttcagACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGC
EST: GAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGG ACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGCEST: gi|89189718|gb|CI049257.1|CI049257
genomic: GAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGGgtatcttcag ... tatttttcagACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGC
EST: ACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGG ACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGCEST: gi|33802600|gb|CF327172.1|CF327172
genomic: ACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGGgtatcttcag ... tatttttcagACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGC
EST: GAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGG ACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGCEST: gi|87039859|gb|CI194481.1|CI194481
genomic: GAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGGgtatcttcag ... tatttttcagACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGC
EST: GAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGG ACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGC
genomic: GAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGGgtatcttcag ... tatttttcagACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATACAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAACCTGCTGGATGAAATGCTGAGGGAAACTGATGAAGTAATTATCAGAAGGCAGCGTATACAAGAAACACTCCAAGTTCTTGAACAGGCTCATAGGgtatcttcagtctcctagatgtcctcatctatttgttcggcaatcttttgatatctatttatttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA