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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAgtgagtaccccccccccccccccccccctagctatttatactactagctgtataaattcgacctatttttcctttgtgaataaatggctcttggtatgatttatag

Basic information

species Oryza sativa
transcript LOC_Os03g42750.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g42750.1 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G099056_T01 (Zea mays), 5'ss of exon 19
ATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAgtgagtaccccccccccccccccccccctagctatttatactactagctgtataaattcgacctatttttcctttgtgaataaatg---gctcttggtatgatttatag
||||||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||    |   |||   |   |    |  | |||  | |  | | | || | |||   || ||||    ||  | |||   ||   |  ||| |||  | |     
ATTTGCTGTCCTTGCATCACGTATGGAACAATATATCCAAGGACAATCCAGGGATTTAATTGATAAAGCATACACAAAGCTAgtgagt--ttcattcccttgcaatcttgcacttgtttgcattcttgg-tatacatattttgccgatttag--ttcataaatttgtgttagtacttagtagtactg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58665096|gb|CK053782.1|CK053782
EST:     ATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTA                         GTCAGCACAATGTTCACAACTTTGGACAAAATTG
genomic: ATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAgtgagtaccc ... tgatttatagGTCAGCACAATGTTCACAACTTTGGACAAAATTG
EST: gi|58680504|gb|CK069191.1|CK069191
EST:     ATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTA                         GTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAA
genomic: ATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAgtgagtaccc ... tgatttatagGTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAA
EST: gi|58604329|gb|CK014857.1|CK014857
EST:     ATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTA                         GTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAA
genomic: ATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAgtgagtaccc ... tgatttatagGTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAA
EST: gi|29645304|gb|CB650311.1|CB650311
EST:     ATATTC-AGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTA                         GTCAGCACAATGTTCACANCTTTGGACAAAATTGCACATAGTGACCCCAAA
genomic: ATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAgtgagtaccc ... tgatttatagGTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAA
EST: gi|29627167|gb|CB632178.1|CB632178
EST:     ATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTA                         GTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAA
genomic: ATATTCAAGGGCAATCCAGAGATTTAATTGATAAAGCATACACAAAGCTAgtgagtaccc ... tgatttatagGTCAGCACAATGTTCACAACTTTGGACAAAATTGCACATAGTGACCCCAAA