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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGATAAAATAGTTGGTTTTGCTTTGAGTCATCAACTTAAGCACTCTACAATTCCAGACCCTTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAGgttcactctaatctttatttcttctccacaatgccaacaaagttctctttatccagtgcatcaatgtgtatattgtccactgcag

Basic information

species Oryza sativa
transcript LOC_Os03g22420.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g22420.2 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G042074_T02 (Zea mays), 5'ss of exon 14
GTATTGATAAAATAGTTGGTTTTGCTTTGAGTCATCAACTTAAGCACTCTACAATTCCAGACCC---TTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAGgttcactctaatctttatttcttctccacaatgccaacaaagtt-ctctttatccagtgcatcaatgtgtat-attgt--ccactgcag
   ||||||||||| |||||||||||||||| |||||||||||| ||| ||||| |||||||||   || |||| |||| |  ||   |||||| || ||||||||   || ||||| |  |  | || ||   |  | | ||  || ||  | | |          || |||   | |||  ||| | |||
---TTGATAAAATAATTGGTTTTGCTTTGAGCCATCAACTTAAGAACTGTACAAATCCAGACCCCCCTTTGAGTAATGTGCAGTTTGTTCTATCCAGCGAAAGgtt---tcaaatctattctagtgcttcaatttttctataagattacttctcaacagaaatgcttatttgttccactgttaccattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688470|gb|CK077157.1|CK077157
EST:     ACAATTCCAGACCCTTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAG                         TCTTAAGCATGGTGTTGACATGTTGGAAAGTGTGGAATCTAACCCTAAGAG
genomic: ACAATTCCAGACCCTTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAGgttcactcta ... tccactgcagTCTTAAGCATGGTGTTGACATGTTGGAAAGTGTGGAATCTAACCCTAAGAG
EST: gi|58605943|gb|CK033976.1|CK033976
EST:     ACAATTCCAGACCCTTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAG                         TCTTAAGCATGGTGTTGACATGTTGGAAAGTGTGGAATCTAACCCTAAGAG
genomic: ACAATTCCAGACCCTTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAGgttcactcta ... tccactgcagTCTTAAGCATGGTGTTGACATGTTGGAAAGTGTGGAATCTAACCCTAAGAG
EST: gi|29635827|gb|CB640836.1|CB640836
EST:     ACAATTCCAGACCCTTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAG                         TCTTAAGCATGGTGTTGACATGTTGGAAAGTGTGGAATCTAACCCTAAGAG
genomic: ACAATTCCAGACCCTTCGAGTGATGTTCGTTTCACTCTATCTAGTGAAAGgttcactcta ... tccactgcagTCTTAAGCATGGTGTTGACATGTTGGAAAGTGTGGAATCTAACCCTAAGAG