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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAAGAAGCGTATTCAAACAAGAGAAGAAAAAATATTTATTCTGGCAAATGATTGTTTAACTGGGGACCCTCTAGTCCATGATCTATCTCTCAACCAGgtaatttgtttgtccagttcaaaataccatttgattttgtcacctattcttttgacatattttaatttttgcgatttgatgcag

Basic information

species Oryza sativa
transcript LOC_Os02g40450.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g40450.1 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G346278_T02 (Zea mays), 5'ss of exon 15
AAGGAAGAAGCGTATTCAAACAAGAGAAGAAAAAATATTTATTCTGGCAAATGATTGTTTAACTGGGGACCCTCTAGTCCATGATCTATCTCTCAACCAGgtaatttgtttgtccagttcaaaataccatttgattttgtcacctattcttttgacatattttaatttttgcgatttgatgcag
||||||||||||| |||| ||||||||||| ||||||||  | || ||||||||||| |||||||| ||| ||||| |||||||| |||| |||||||||||  |||| ||||  || |  | | |||  |||||||| || |||| | | ||||| ||  |  | |     |           
AAGGAAGAAGCGTGTTCAGACAAGAGAAGAGAAAATATTCTTGCTAGCAAATGATTGCTTAACTGGAGACTCTCTAATCCATGATTTATCCCTCAACCAGgttgtttgcttgtttaggttcagacaccccttgattttctcccctactatgttgacttaagtggactcccatgcag--------

upper sequence: LOC_Os02g40450.1 (Oryza sativa), 5'ss of exon 19
lower sequence: GLYMA16G07850.1 (Glycine max), 5'ss of exon 18
AAGGAAGAAGCGTATTCAAACAAGAGAAGAAAAAATATTTATTCTGGCAAATGATTGTTTAACTGGGGACCCTCTAGTCCATGATCTATCTCTCAACCAGgtaatttgtttgtccagttcaaaataccatttgattttgtcacctattcttttgacatattt-taatttttgcgatttgatgcag---
|| ||||||||| |||||||||||||||||||| ||||||||  | |||||||| || ||||| || || ||   ||| ||||| |||||  | |  |||||       |||  || |  |||||  ||||   ||||||     |   || | | || ||| | |||      | | |||||     
AAAGAAGAAGCGCATTCAAACAAGAGAAGAAAAGATATTTATATTAGCAAATGACTGCTTAACCGGTGATCCATCAGTTCATGACCTATCGTTGATTCAGgtg------ttg--cattgtaaaat--cattattttttgtagatcaacattcttatatctttgtgattaagtaaactcgatgccacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33675143|gb|CF303382.1|CF303382
EST:     ATGATTGTTTAACTGGGGACCCTCTAGTCCATGATCTATCTCTCAACCAG                         GAAATGAATTCAATATGCTCAAATGGATGCAGGGTTGCCAAATGCATGAGA
genomic: ATGATTGTTTAACTGGGGACCCTCTAGTCCATGATCTATCTCTCAACCAGgtaatttgtt ... tttgatgcagGAAATGAATTCAATATGCTCAAATGGATGCAGGGTTGCCAAATGCATGAGA