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AGACGACCTCTTTGCGGACATGCTCAGAGAACCCGATGAAATAACCATAAAGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttgtcagaactaagttttccattttaatagcatttcatactgattgatctaacattaaattatttattggccttgtgacatgcttcag
species | Oryza sativa |
transcript | LOC_Os01g69130.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAG ACTTTGGATGAGEST: gi|38476196|gb|CF960329.1|CF960329
genomic: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttg ... catgcttcagACTTTGGATGAG
EST: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAG ACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCCEST: gi|88200886|gb|CI198738.1|CI198738
genomic: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttg ... catgcttcagACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCC
EST: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAG ACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCCEST: gi|86479683|gb|CI122316.1|CI122316
genomic: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttg ... catgcttcagACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCC
EST: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAG ACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTTCEST: gi|86478751|gb|CI121384.1|CI121384
genomic: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttg ... catgcttcagACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCC
EST: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAG ACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCCEST: gi|25806989|gb|CA762950.1|CA762950
genomic: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttg ... catgcttcagACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCC
EST: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAG ACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCCEST: gi|88962547|gb|CI097699.1|CI097699
genomic: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttg ... catgcttcagACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCC
EST: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAG ACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCCEST: gi|29625093|gb|CB630104.1|CB630104
genomic: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttg ... catgcttcagACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCC
EST: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAG ACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCCEST: gi|58683601|gb|CK072288.1|CK072288
genomic: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttg ... catgcttcagACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCC
EST: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAG ACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCCEST: gi|29625094|gb|CB630105.1|CB630105
genomic: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttg ... catgcttcagACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCC
EST: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAG ACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCCEST: gi|88840611|gb|CI080065.1|CI080065
genomic: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttg ... catgcttcagACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCC
EST: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAG ACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCC
genomic: AGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttg ... catgcttcagACTTTGGATGAGATACCACTTGAAGCGGACACAGTTGAGAGAGGCTATTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACGACCTCTTTGCGGACATGCTCAGAGAACCCGATGAAATAACCATAAAGAGGAGGCAAATACGTGACACCCTCAAGGTCCTTCAGCAAGCATACAAGgtatgttttgtcagaactaagttttccattttaatagcatttcatactgattgatctaacattaaattatttattggccttgtgacatgcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG