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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCTATTGCCGCATCAGATACGAGGATCACTCTCGCAGTACAACTTACTAACCCTATTGGGCTATTCCTCGAGCAATTGTACCGCATGTTCCAATGCAgtaagtaaacatttatgattgcatgatttggaacagtttctttagaacttctttcttgtattgtattgcttcttcctcatgtgatttggtgcaaaatattgcag

Basic information

species Oryza sativa
transcript LOC_Os01g42850.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g42850.2 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G005304_T01 (Zea mays), 5'ss of exon 19
TGGTCTATTGCCGCATCAGATACGAGGATCACTCTCGCAGTACAACTTACTAACCCTATTGGGCTATTCCTCGAGCAATTGTACCGCATGTTCCAATGCAgtaagtaaacatt-tatgattgcatga-tttggaacagtttctttagaacttctttcttgtattgtattgcttcttcctcatgtgatttggtgcaaaatattgcag---------------------------------------------------------------------------------
 || || || || || ||||| || |||||||| |||||||||||| || ||||||| ||||||||||||||||| ||||| || ||||| ||| |||| ||| ||| ||  | ||   |||||| |   | |  |||    |    |||| ||| | ||  ||   | || | ||   || |  | | | |   | |     | |                                                                                 
CGGCCTTTTACCTCACCAGATGCGTGGATCACTATCGCAGTACAACATATTAACCCTGTTGGGCTATTCCTCGAGTAATTGCACGGCATGCTCCCATGCGgtatgtacactctctactcttgcataagcctagtgcagcaagtagttaactgcttgcatggtttagctggcatgttatgca-gcaagtagttttgagagcgctcgggtttgactgtttgagtgtcatccttttccggttccaacaaatgcaaacgatactaaatttagctggcatcttacatcacag

upper sequence: LOC_Os01g42850.2 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G005304_T01 (Zea mays), 5'ss of exon 13
TGGTCTATTGCCGCATCAGATACGAGGATCACTCTCGCAGTACAACTTACTAACCCTATTGGGCTATTCCTCGAGCAATTGTACCGCATGTTCCAATGCAgtaagtaaacatttatgattgcatgatttggaacagtttctttagaacttctttcttgtattgtattgcttcttcctcatgtgatttggtgcaaaatattgcag
|||||||||||| |||||| |||||||||||||| |  |||   | ||| |        |   | |||||||   ||| ||||| ||||||||   ||| |||||||||   |    | | ||||      || |  ||||  | || ||             ||| ||||||     |||| | |  |||| ||| ||| |||
TGGTCTATTGCCACATCAGCTACGAGGATCACTCCCCAAGTGTGATTTATTTGTGGAGCTCAACAATTCCTCAGTCAACTGTACTGCATGTTCTGTTGCTgtaagtaaattct----actacatggc----aatacattctc-acaattt-------------tatggcttcta----atgttactccgtgctaaacattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88845967|gb|CI084697.1|CI084697
EST:     TAACCCTATTGGGCTATTCCTCGAGCAATTGTACCGCATGTTCCAATGCA                         GTGTTGTCTGAATACCATAGGAGAGGGATGGATTTTGTGATGCAGGTGATC
genomic: TAACCCTATTGGGCTATTCCTCGAGCAATTGTACCGCATGTTCCAATGCAgtaagtaaac ... aatattgcagGTGTTGTCTGAATACCATAGGAGAGGGATGGATTTTGTGATGCAGGTGATC