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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTACACAAATTCTGGTGTTGGCTTGCTAGCACTTGGTTCCAATGCCATTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatattactctctctttgttctttggggtttaggctaatcaagggcagcgtgtaattctgtcaattctgctaagcag

Basic information

species Oryza sativa
transcript LOC_Os01g15020.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g15020.2 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G416836_T01 (Zea mays), 5'ss of exon 17
TCTGTACACAAATTCTGGTGTTGGCTTGCTAGCACTTGGTTCCAATGCCATTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatat--tactctctctttgttc-tttggggtttaggctaatcaagggcagcgtgtaattctgtcaattctgctaagcag
|||||||||||||||||||||||| ||||||||||| || || || |||||||||||||| |||||||||  ||| || || |||||||| ||||| || |||| |  |||| |    ||| || ||||   ||||||  || ||||| ||   ||||||| |  |  |  |  | ||   
TCTGTACACAAATTCTGGTGTTGGGTTGCTAGCACTAGGGTCAAACGCCATTCAAAGGCTATGGAAATGGAGTCGAAACGAGCAAAATCCTAGTGGAAAAgtatgtgttacttttctgttgatcatttgtattttaggacaaccaaggtcatgttgtaatttttcctgtcgtaatcag---

upper sequence: LOC_Os01g15020.2 (Oryza sativa), 5'ss of exon 19
lower sequence: GRMZM2G316967_T01 (Zea mays), 5'ss of exon 19
TCTGTACACAAATTCTGGTGTTGGCTTGCTAGCACTTGGTTCCAATGCCATTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatatt---actctctctttgttctttggggtttaggctaatcaagggcagcgtgtaattctgtcaattctgctaagcag
|||||||||||||||||||||||| ||||||||||| || || || |||||||||||||| |||||||||  ||| || || |||||||| ||||| || |||| |      | ||| || ||  ||||   |||| |  ||||||||  |   ||||||| |  |  ||||   ||||||
TCTGTACACAAATTCTGGTGTTGGGTTGCTAGCACTAGGGTCTAACGCCATTCAAAGGCTATGGAAATGGAGTCGAAACGAACAAAATCCGAGTGGAAAAgtatgtgttagttttctgttggtcatttgtattttaagacaatcaaggttacgttgtaatttttcctgttct---aagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58595855|gb|CK006383.1|CK006383
EST:     TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAG                         GCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
genomic: TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatattact ... tgctaagcagGCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
EST: gi|58679784|gb|CK068471.1|CK068471
EST:     TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAG                         GCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
genomic: TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatattact ... tgctaagcagGCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
EST: gi|29625565|gb|CB630576.1|CB630576
EST:     TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAG                         GCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
genomic: TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatattact ... tgctaagcagGCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
EST: gi|58606459|gb|CK034492.1|CK034492
EST:     TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAG                         GCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
genomic: TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatattact ... tgctaagcagGCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
EST: gi|58601227|gb|CK011755.1|CK011755
EST:     TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAG                         GCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
genomic: TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatattact ... tgctaagcagGCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
EST: gi|29626131|gb|CB631142.1|CB631142
EST:     TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAG                         GCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
genomic: TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatattact ... tgctaagcagGCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
EST: gi|29619450|gb|CB624462.1|CB624462
EST:     TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAG                         GCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
genomic: TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatattact ... tgctaagcagGCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
EST: gi|29630393|gb|CB635402.1|CB635402
EST:     TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAG                         GCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
genomic: TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatattact ... tgctaagcagGCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
EST: gi|33675602|gb|CF303841.1|CF303841
EST:     TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAG                         GCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC
genomic: TTCAAAGGCTGTGGAAATGGGCTCGGAATGATCAAAATCCAAGTGGGAAGgtatattact ... tgctaagcagGCCACAGCCAATGTAGTGCCACAACATTGGCAACCAAACAGTGGTCTTGTC