1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
GTTGTGCACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGGAATTgtgagtgactacaaaacctattgggttcaaactgtttaattggctaattatctagcatgtatgtgtaacgttaatttcttccccattctttaag
species | Oryza sativa |
transcript | LOC_Os11g36470.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGGAATT GTCAAAACTTCATACCTATGATGATGTTEST: gi|58655314|gb|CK043994.1|CK043994
genomic: CACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGGAATTgtgagtgact ... attctttaagGTCAAAACTTCATACCTATGATGATGTT
EST: CACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGGAATT GTCAAAACTTCATACCTATGATGATGTTGTTGAGAGAGTTGCCCGTEST: gi|58665067|gb|CK053753.1|CK053753
genomic: CACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGGAATTgtgagtgact ... attctttaagGTCAAAACTTCATACCTATGATGATGTTGTTGAGAGAGTTGCCCGT
EST: CCAAAGGATGATGACTTTTCTTTGGAATT GTCAAAACTTCATACCTATGATGATGTTGTTGAGAGAGTTGCCCGTCAGCTEST: gi|58674845|gb|CK063532.1|CK063532
genomic: CCAAAGGATGATGACTTTTCTTTGGAATTgtgagtgact ... attctttaagGTCAAAACTTCATACCTATGATGATGTTGTTGAGAGAGTTGCCCGTCAGCT
EST: CACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGGAATT GTCAAAACTTCATACCTATGATGATGTTGTTGAGAGAGTTGCCCGTCAGCTEST: gi|58661692|gb|CK050372.1|CK050372
genomic: CACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGGAATTgtgagtgact ... attctttaagGTCAAAACTTCATACCTATGATGATGTTGTTGAGAGAGTTGCCCGTCAGCT
EST: CACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGGAATT GTCAAAACTTCATACCTATGATGATGTTGTTGAGAGAGTTGCCCGTCAGCT
genomic: CACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGGAATTgtgagtgact ... attctttaagGTCAAAACTTCATACCTATGATGATGTTGTTGAGAGAGTTGCCCGTCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTGCACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGGAATTgtgagtgactacaaaacctattgggttcaaactgtttaattggctaattatctagcatgtatgtgtaacgttaatttcttccccattctttaag
- - - - - - - - - TTGGAG
- - - - - - - - - TGGAGA
- - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - AGGATG