1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
AAAGGCAATTCACCTAGAGACAACGCCATTCAGCATAGAGAAGGACCTGGTGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagagaacaaactctataaccatgatttcctggttttgttcttatgatttattttacggatgcaaacatgtgaatgaagttcttcatgacattattctggtgatctttataagactaagcatgtggataatggtagcacatttttttaatgcag
species | Oryza sativa |
transcript | LOC_Os11g35400.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAG GATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGAEST: gi|58679886|gb|CK068573.1|CK068573
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
EST: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAG GATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGAEST: gi|66947112|gb|AU311956.1|AU311956
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
EST: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAG GATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGAEST: gi|66947111|gb|AU311955.1|AU311955
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
EST: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAG GATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGAEST: gi|66947113|gb|AU311957.1|AU311957
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
EST: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAG GATTGCNNNGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGAEST: gi|88476345|gb|CI413616.1|CI413616
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
EST: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAG GATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGAEST: gi|86501811|gb|CI144444.1|CI144444
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
EST: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAG GATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGAEST: gi|88460370|gb|CI529445.1|CI529445
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
EST: NGACTCCAACTTTTAAGCTCAAGAGACCCCANCTGCTCAAATATTACAAG GATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGAEST: gi|86501867|gb|CI144500.1|CI144500
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
EST: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAG GATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
genomic: TGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagaga ... tttaatgcagGATTGCATTGATCAGCTGTACAAGGATGCCAAGGTGGGAAATAAACAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGCAATTCACCTAGAGACAACGCCATTCAGCATAGAGAAGGACCTGGTGACTCCAACTTTTAAGCTCAAGAGACCCCAGCTGCTCAAATATTACAAGgttagagagaacaaactctataaccatgatttcctggttttgttcttatgatttattttacggatgcaaacatgtgaatgaagttcttcatgacattattctggtgatctttataagactaagcatgtggataatggtagcacatttttttaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT