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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAGAAACTGAAGAGACTACTATACAGAAGCTCCAAGATGAAATAAAAGAATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggccattgggccactgaatcaacttattctggattatgtcgatttgtctctgaacctagatgtagatatctgggatttaattattatttacacc...

Basic information

species Oryza sativa
transcript LOC_Os10g41590.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g41590.1 (Oryza sativa), 5'ss of exon 18
lower sequence: GRMZM2G341271_T02 (Zea mays), 5'ss of exon 19
CTCAGAAACTGAAGAGACTACTATACAGAAGCTCCAAGATGAAATAAAAGAATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggccat--------tgggccactgaatcaacttattctggattatgtcgatttgtctctgaacctagatgtagatatctggg-atttaattattatttacacc---------------------------------------------
||| || ||||||||||||||| | | ||| ||  | |||||||||||||||||||||| ||||||||||||||| || ||||| |||||||| |||||||| |      ||         | |   || |||||   | ||   | ||    | |||  |  ||  |||  || ||   | | |     ||  || || | ||   ||                                             
CTCTGAGACTGAAGAGACTACTGTCCGGAAACTTGAGGATGAAATAAAAGAATGCAAGGGTATTCTCAAGTGTGGTGTATGCTTTGACCGGCCTAAAGAGgtaacatataatgtactgtacgtgtttctcaatcatgattttagaggtttacaccattcttagctccaccacgaagttcctgtttctttgttggatgatcaattttgccgcctaaactgacgaggattgtatttttctgtatattcgttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88519007|gb|CI446661.1|CI446661
EST:     CTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: CTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|89178144|gb|CI391323.1|CI391323
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88287969|gb|CI512646.1|CI512646
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|86481915|gb|CI124548.1|CI124548
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|86890240|gb|CI321417.1|CI321417
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88301832|gb|CI503298.1|CI503298
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88907883|gb|CI090479.1|CI090479
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTCCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88293868|gb|CI507977.1|CI507977
EST:     AATGCAAGGCTATTCTCAAGTNTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88275525|gb|CI396129.1|CI396129
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88565634|gb|CI496351.1|CI496351
EST:     GGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: GGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88265255|gb|CI369029.1|CI369029
EST:     AATGC-AGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88485285|gb|CI422556.1|CI422556
EST:     ATGCAAGGCTATTCTCAAGTGTGGGGTGTGGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: ATGCAAGGCTATTCTCAAGTGTGGGGTGT-GCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|86430665|gb|CI083088.1|CI083088
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88996353|gb|CI389064.1|CI389064
EST:     AGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88435409|gb|CI509080.1|CI509080
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         TTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88215051|gb|CI214900.1|CI214900
EST:     AAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88565016|gb|CI495733.1|CI495733
EST:     AATGCAAGGCTATTCTCAAGTNTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88262241|gb|CI365817.1|CI365817
EST:     ATGCAAGGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         TTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: ATGCAA-GGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88379624|gb|CI501526.1|CI501526
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88377958|gb|CI501227.1|CI501227
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|29681303|gb|CB677578.1|CB677578
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88483013|gb|CI420284.1|CI420284
EST:     ATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: ATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|87028074|gb|CI257234.1|CI257234
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAATAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88294027|gb|CI510335.1|CI510335
EST:     AATGCGAGGCTATTTTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88429721|gb|CI548918.1|CI548918
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88563762|gb|CI494479.1|CI494479
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88287558|gb|CI507448.1|CI507448
EST:     AATGCAAGGCTATTCTCAAGTNTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88317955|gb|CI500926.1|CI500926
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88454816|gb|CI511788.1|CI511788
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88418481|gb|CI504105.1|CI504105
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88435097|gb|CI504439.1|CI504439
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88419042|gb|CI508995.1|CI508995
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGGTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88415879|gb|CI536033.1|CI536033
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88978225|gb|CI384699.1|CI384699
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88285214|gb|CI504885.1|CI504885
EST:     AATGCAAGGCTATTCTCAAGTNTGGGGTGTGCTTCGACCGGCCGAAAGAG                         TTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88504585|gb|CI432091.1|CI432091
EST:     ATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: ATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88467648|gb|CI507073.1|CI507073
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88568375|gb|CI499092.1|CI499092
EST:     AATGCAAGGCTATTCTCAAGTNTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCNTGATCACCAAATGCTTCCACTTATTCTGCTCNCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|86901313|gb|CI326156.1|CI326156
EST:     AATGCAAGGCTATTGTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTGTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88467920|gb|CI509735.1|CI509735
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGNCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88287570|gb|CI507460.1|CI507460
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88564026|gb|CI494743.1|CI494743
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88504074|gb|CI431580.1|CI431580
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|86437107|gb|CI118829.1|CI118829
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|86479463|gb|CI122096.1|CI122096
EST:     AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: AATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88378242|gb|CI503808.1|CI503808
EST:     CGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: CGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88565717|gb|CI496434.1|CI496434
EST:     TATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: TATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
EST: gi|88419096|gb|CI511248.1|CI511248
EST:     ATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAG                         GTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG
genomic: ATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 67 (upstream exon), 68 (downstream exon)
Score: 21

CTCAGAAACTGAAGAGACTACTATACAGAAGCTCCAAGATGAAATAAAAGAATGCAAGGCTATTCTCAAGTGTGGGGTGTGCTTCGACCGGCCGAAAGAGgtgatgggcc ... tttttggcagGTCGTGATCACCAAATGCTTCCACTTATTCTGCTCGCCATGTATCCAGAGGAACCTTGAGATCCGCCACCGCAAATGCCCAGGTTGTGGCACCCCCTTTG




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