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TGAATCTGAAAAGGTTAAAACCTGGAAGTTGGCAGACATTGGTGACTCAGGACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaacaatgtgtgcttggttgctatcaagtctgttgagttataaatattgatcatgcaataataacctgattaccttaaacatatgagcttgtc...
species | Oryza sativa |
transcript | LOC_Os08g06480.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|58676199|gb|CK064886.1|CK064886
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|58664660|gb|CK053346.1|CK053346
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTEST: gi|66913224|gb|CX100072.1|CX100072
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCT
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|58681187|gb|CK069874.1|CK069874
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|33675906|gb|CF304145.1|CF304145
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|29616634|gb|CB621646.1|CB621646
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTEST: gi|163929084|gb|EG710965.1|EG710965
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCT
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|300216043|gb|HO088669.1|HO088669
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|33675039|gb|CF303278.1|CF303278
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|86907237|gb|CI292823.1|CI292823
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|88316475|gb|CI621714.1|CI621714
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|33678958|gb|CF307197.1|CF307197
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|55411770|gb|CV724146.1|CV724146
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: GACATCTCCGAGCACTGCGTATGCCGGATACATCATTTTCTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGCEST: gi|88415142|gb|CI583965.1|CI583965
genomic: GACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
EST: ACATCTCCGAGCACTGCGTATGCCTGGATACATCAGCAACTTCAAGCAAA GTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
genomic: ACATCTCCGAGCACTGCGTATGCC-GGATACATCAGCAACTTCAAGCAAAgtatgttgaa ... tgttgcacagGTTGTGCGTCTGCTGTATACAAATAATGGGGTTGCGCTTTTGGCTCTTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAATCTGAAAAGGTTAAAACCTGGAAGTTGGCAGACATTGGTGACTCAGGACATCTCCGAGCACTGCGTATGCCGGATACATCAGCAACTTCAAGCAAAgtatgttgaacaatgtgtgcttggttgctatcaagtctgttgagttataaatattgatcatgcaataataacctgattaccttaaacatatgagcttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA