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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGGGCTGGATGAGGGCATCAAGAGCTCAGGGTCGAAGAAGACCGTGCTTACTTCCAGCGGGCCGCTTGATGAGAACTCATTCCAGCAGCCACAAAAGgttagtacactacacactgactgacagctgatcatgtatcctatcctgtaaattaaacaaaacagatggtagtaactatattgaatgtgtacgaaattgttgtag

Basic information

species Oryza sativa
transcript LOC_Os07g48750.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g48750.1 (Oryza sativa), 5'ss of exon 18
lower sequence: GRMZM2G097277_T01 (Zea mays), 5'ss of exon 16
GTCTGGG-CTGGATGAGGGCATCAAGAGCTCAGGGTCGAAGAAGACCGTGCTTACTTCCAGCGGGCCGCTTGATGAGAACTCATTCCAGCAGCCACAAAAGgttagtacactacacactgactgacagctgatcatgtatcctatcctgtaaattaaacaaaacagatggtagtaactatattgaatgtgtacgaaattgttgtag
 | |||  ||||     ||| ||||||  || || |||||| |||| || || || |||||| | |||||||| |||||||| |||||||||||| | |||||| || ||| ||  ||||| | |  |   |     | | |     | || |||| | | ||| | ||   ||   |  || | |||  | |             
-TGTGGAACTGGCCACCGGCGTCAAGAAGTCTGGATCGAAGCAGACGGTTCTAACGTCCAGCAGTCCGCTTGACGAGAACTCCTTCCAGCAGCCAGAGAAGgttggtgcacgacgtactgaatcagtgggcagtgcatgttcagggttatatattacagataactg-tgtgtgtgtgtgcat-gcatgcatgcag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86887656|gb|CI311939.1|CI311939
EST:     TTACTTCCAGCGGGCCGCTTGATGAGAACTCATTCCAGCAGCCACAAAAG                         GTGGCGCCAGTGTCGAGCCCGGTGGACAACGCGAATGAGCAGATGGGCGTG
genomic: TTACTTCCAGCGGGCCGCTTGATGAGAACTCATTCCAGCAGCCACAAAAGgttagtacac ... attgttgtagGTGGCGCCAGTGTCGAGCCCGGTGGACAACGCGAATGAGCAGATGGGCGTG
EST: gi|87016572|gb|CI273782.1|CI273782
EST:     TTACTTCCAGCGGCCCGCTTGATGAGAACTCATTCCAGCAGCCACAAAAG                         GTGGCGCCAGTGTCGAGCCCGGTGGACAACGCGAATGAGCAGATGGGCGTG
genomic: TTACTTCCAGCGGGCCGCTTGATGAGAACTCATTCCAGCAGCCACAAAAGgttagtacac ... attgttgtagGTGGCGCCAGTGTCGAGCCCGGTGGACAACGCGAATGAGCAGATGGGCGTG