1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CAGTTGTTCATACATTCCTTGATTCCTTGATGCATCTCGAAAAAGAGCTACCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagtttcacttgtgttctctcttatgcgctcctctgcttaccttacccctgtgctctcctctgcttaccttacctctgtgctcagcttgtagctcatgatacctccttgtttgcag
species | Oryza sativa |
transcript | LOC_Os07g32400.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTEST: gi|86844981|gb|CI340969.1|CI340969
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTEST: gi|87020794|gb|CI269511.1|CI269511
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTEST: gi|33678909|gb|CF307148.1|CF307148
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGTTAGGGAG CTCGAAGGAGTCCTCGCTGCEST: gi|87032664|gb|CI270299.1|CI270299
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGC
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTEST: gi|88228909|gb|CI226760.1|CI226760
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTEST: gi|88997813|gb|CI390351.1|CI390351
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTEST: gi|29661925|gb|CB658200.1|CB658200
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTEST: gi|86820988|gb|CI357680.1|CI357680
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTEST: gi|87038070|gb|CI190694.1|CI190694
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTEST: gi|86528838|gb|CI169044.1|CI169044
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTEST: gi|88236841|gb|CI234692.1|CI234692
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTTEST: gi|88290287|gb|CI550509.1|CI550509
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
EST: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAG CTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
genomic: CCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagttt ... ttgtttgcagCTCGAAGGAGTCCTCGCTGCAAAGTCTTCAAGAGACGGCGACATCAGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTTGTTCATACATTCCTTGATTCCTTGATGCATCTCGAAAAAGAGCTACCTGGATCTTGTGAGGTGCTGATTGGCAGAATGCTCCATCGGCTAGGGAGgtctgagtttcacttgtgttctctcttatgcgctcctctgcttaccttacccctgtgctctcctctgcttaccttacctctgtgctcagcttgtagctcatgatacctccttgtttgcag
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