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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGAGGAGGGTGATACCTGGCAGCGCCAATGGTCAATACGAGTTTGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctttagatcttatcggaataaatgatggcttcatggatcatgggcaagaaattaacttttgttcttgtgcgcttactctag

Basic information

species Oryza sativa
transcript LOC_Os07g22720.2
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22720.2 (Oryza sativa), 5'ss of exon 18
lower sequence: GRMZM2G015132_T01 (Zea mays), 5'ss of exon 17
CTGAGAGGAGGGTGATACCTGGCAGCGCCAATGGTCAATACGAGTTTGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctttagatcttatcggaataaatgatggcttcatggatcatgggcaagaaattaac--ttttgttcttgtgcgcttactctag
|||||| |||||||||||||||   |||  |||| || |  || |||||||| |||||||| || ||| |||||||||| ||||||||||| |||||||  || ||  | |||     ||  | | | |   | ||||||   ||| | || |||||||     ||    |||||           
CTGAGAAGAGGGTGATACCTGGTTCCGCTGATGGCCAGTTTGAATTTGGTTCATTCATGTCAGCTACACTGAGCTGTGACCACAGGGTTATAGATGgtaagctatt--ggtctgt---gaccacagggtta-tccatggactgtggacgaggaattaacaacgctgaaactgtgcag---------

upper sequence: LOC_Os07g22720.2 (Oryza sativa), 5'ss of exon 18
lower sequence: GRMZM2G161969_T01 (Zea mays), 5'ss of exon 14
CTGAGAGGAGGGTGATACCTGGCAGCGCCAATGGTCAATACGAGTTTGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctttagatcttatcggaataaatgatggcttcatggatcatgggcaagaaattaacttttgttcttgtgcgcttactctag
            ||||||||||   |||| ||||||  || ||||||||||| |||||||| || ||| |||||||||| ||||||||||| |||||||  || ||  | ||||       |    |||| || ||||||   ||| |  | |||||||| |  |  |  ||       |  ||
------------TGATACCTGGTTCCGCCGATGGTCTGTATGAGTTTGGTTCGTTCATGTCAGCCACACTGAGCTGTGACCACAGGGTTATAGATGgtaagctatt--ggtctt-------tgtgcgatgcctccatggactgtggactgggaattaactatgctgttcatggaaactgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86477689|gb|CI120322.1|CI120322
EST:     TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATG                         GTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
genomic: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
EST: gi|88955792|gb|CI092081.1|CI092081
EST:     GCAACAATGAGCTGTGATCACAGGGTTATTGATG                         GTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
genomic: GCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
EST: gi|89183783|gb|CI046348.1|CI046348
EST:     TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATG                         GTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
genomic: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
EST: gi|89192614|gb|CI049912.1|CI049912
EST:     TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATG                         GTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
genomic: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
EST: gi|88839241|gb|CI000713.1|CI000713
EST:     TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATG                         GTGCAGTCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
genomic: TGGTTCCTTCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
EST: gi|89186760|gb|CI052173.1|CI052173
EST:     TCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATG                         GTGCCATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC
genomic: TCATGTCGGCAACAATGAGCTGTGATCACAGGGTTATTGATGgtatactctt ... cttactctagGTGCAATCGGGGCAGAATTTCTGAAAGCATTCAAGGGCTATATCGAGAATC