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CACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTGATACTGGAATCAATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGgtgggtcaccatagttgatttgcattcatttgtgcattttgtcagcatatgagatgttcaaattgacagtaatttcgttttattccacag
species | Oryza sativa |
transcript | LOC_Os07g22400.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: ATCATCCTAATCAGTACTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAG AATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAEST: gi|38470072|gb|CF954203.1|CF954203
genomic: ATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGgtgggtcacc ... tattccacagAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCA
EST: ATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAG AATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAEST: gi|27921211|gb|CB097019.1|CB097019
genomic: ATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGgtgggtcacc ... tattccacagAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCA
EST: ATCATCCTAATCAGTACTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAG AATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCAEST: gi|88906377|gb|CI375449.1|CI375449
genomic: ATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGgtgggtcacc ... tattccacagAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCA
EST: AT-ATCCTAATCATTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAG AATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCA
genomic: ATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGgtgggtcacc ... tattccacagAATCAAGCAGTGCAGAGCCAAGGAACAACCTAAACTGTAATGCTGCTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGATGACTTTTGAGGCAGAACATGGTGTCTCATGTGATACTGGAATCAATCATCCTAATCAGTATTTCAGTGAAAGCCAGAAAGTCTTGAAAGCAAAGgtgggtcaccatagttgatttgcattcatttgtgcattttgtcagcatatgagatgttcaaattgacagtaatttcgttttattccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG