1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GTAACATTCGTGGTTGTCCAAAAGCGTCACCATACAAGACTCTTCGCAAACAATCACAAAGACAGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTGgtaattactattcatcacctcttaaggcatttcattggatctactgcagatgataatgcaaccaacatattgcaaaaatattttttttattttaactaaa...
species | Oryza sativa |
transcript | LOC_Os06g39640.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CAATCACAAAGACAGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTG GAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACCEST: gi|29674861|gb|CB671136.1|CB671136
genomic: CAATCACAAAGACAGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTGgtaattacta ... taaaaaacagGAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACC
EST: CAATCACAAAGACAGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTG GAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACCEST: gi|8404400|gb|AU091754.1|AU091754
genomic: CAATCACAAAGACAGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTGgtaattacta ... taaaaaacagGAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACC
EST: CATCACAAAGACAGAAGTAGCACCGGACAAAAGTGGAAACATTTTGCCTG GAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACCEST: gi|86477748|gb|CI120381.1|CI120381
genomic: AATCACAAAGACAGAAGTAGCA-CGGACAAAAGTGGAAACATTTTGCCTGgtaattacta ... taaaaaacagGAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACC
EST: AGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTG GAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTGTGATTTCTACCEST: gi|29636972|gb|CB641981.1|CB641981
genomic: AGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTGgtaattacta ... taaaaaacagGAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACC
EST: CAATCACAAAGACAGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTG GAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTATACCEST: gi|27576993|gb|CA999687.1|CA999687
genomic: CAATCACAAAGACAGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTGgtaattacta ... taaaaaacagGAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACC
EST: CAATCACAAAGACAGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTG GAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACC
genomic: CAATCACAAAGACAGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTGgtaattacta ... taaaaaacagGAACTGTTGTTGATTCAAAGATCTGCCACCCATCAGAGTTTGATTTCTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAACATTCGTGGTTGTCCAAAAGCGTCACCATACAAGACTCTTCGCAAACAATCACAAAGACAGAAGTAGCACGGACAAAAGTGGAAACATTTTGCCTGgtaattactattcatcacctcttaaggcatttcattggatctactgcagatgataatgcaaccaacatattgcaaaaatattttttttattttaactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata