1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TTGGAAGAGCTAAGAAATGACATTGTTGACCTAAAAGAGATGTACAGAGAACAAGTGGATCTTCTTGTTAGCCAGgtttgaagcttatcagttgaactttattttttcatttgataaatcgttgttgccataagtccctaacccccggcttccattttatcag
species | Oryza sativa |
transcript | LOC_Os05g48620.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: TTGACCTAAAAGAGATGTACAGAGAACAAGTGGATCTTCTTGTTAGCCAG CTCCAATCTTTGGGTGCTCGTGTATAGTGCTGCTGTATGTCAGTATGTAGCEST: gi|24208733|gb|AU225760.1|AU225760
genomic: TTGACCTAAAAGAGATGTACAGAGAACAAGTGGATCTTCTTGTTAGCCAGgtttgaagct ... attttatcagCTCCAATCTTTGGGTGCTCGTGTATAGTGCTGCTGTATGTCAGTATGTAGC
EST: TTGACCTAAAAGAGATGTACAGAGAACAAGTGGATCTTCTTGTTAGCCAG CTCCAATCTTTGGGTGCTCGTGTATAGTGCTGCTGTATGTCAGTATGTAGCEST: gi|88251052|gb|CI349282.1|CI349282
genomic: TTGACCTAAAAGAGATGTACAGAGAACAAGTGGATCTTCTTGTTAGCCAGgtttgaagct ... attttatcagCTCCAATCTTTGGGTGCTCGTGTATAGTGCTGCTGTATGTCAGTATGTAGC
EST: TTGACCTAAAAGAGATGTACAGAGAACAAGTGGATCTTCTTGTTAGCCAG CTCCAATCTTTGGGTGCTCGTGTATAGTGCTGCTGTATGTCAGTATGTAGCEST: gi|88964690|gb|CI070036.1|CI070036
genomic: TTGACCTAAAAGAGATGTACAGAGAACAAGTGGATCTTCTTGTTAGCCAGgtttgaagct ... attttatcagCTCCAATCTTTGGGTGCTCGTGTATAGTGCTGCTGTATGTCAGTATGTAGC
EST: TTGACCTAAAAGAGATGTACAGAGAACAAGTGGATCTTCTTGTTAGCCAG CTCCAATCTTTGGGTGCTCGTGTATAGTGCTGCTGTATGTCAGTATGTAGC
genomic: TTGACCTAAAAGAGATGTACAGAGAACAAGTGGATCTTCTTGTTAGCCAGgtttgaagct ... attttatcagCTCCAATCTTTGGGTGCTCGTGTATAGTGCTGCTGTATGTCAGTATGTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGAAGAGCTAAGAAATGACATTGTTGACCTAAAAGAGATGTACAGAGAACAAGTGGATCTTCTTGTTAGCCAGgtttgaagcttatcagttgaactttattttttcatttgataaatcgttgttgccataagtccctaacccccggcttccattttatcag
- - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA