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GAAACCATTACTTTTGAAATATGCTAGGAGTATTGGATATTCCATTGATGATGCCCTTAGTGTGATTCTGGGTATGTCATCTGGCAAGAAGTCTGTCAAGgtacaattcaactggttatatatgtttttgccttatagctttcctaccatctaccttcatttaacttcacttctcaaagttctttttctaccattatatc...
species | Oryza sativa |
transcript | LOC_Os05g27870.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GAAGTCTGTCAAG GATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAATEST: gi|88269746|gb|CI381044.1|CI381044
genomic: GAAGTCTGTCAAGgtacaattca ... gcgtttgcagGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAAT
EST: ATGCCCTTAGTGTGATTCTGGGTATGTCATCTGGCAAAAAGTCTGTCAAG GATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAATEST: gi|15848676|gb|BI796952.1|BI796952
genomic: ATGCCCTTAGTGTGATTCTGGGTATGTCATCTGGCAAGAAGTCTGTCAAGgtacaattca ... gcgtttgcagGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAAT
EST: ATCTGGCAAGAAGTCTGTCAAG GATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAATEST: gi|11025806|gb|AU162407.1|AU162407
genomic: ATCTGGCAAGAAGTCTGTCAAGgtacaattca ... gcgtttgcagGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAAT
EST: ATGCCCTTAGTGTGATTCTGGGTATGTCATCTGGCAAGAAGTCTGTCAAG GATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAAT
genomic: ATGCCCTTAGTGTGATTCTGGGTATGTCATCTGGCAAGAAGTCTGTCAAGgtacaattca ... gcgtttgcagGATTTTACCCCTGATATAGTCAGTTGGATGAGCTTTGCTGTATTTATCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACCATTACTTTTGAAATATGCTAGGAGTATTGGATATTCCATTGATGATGCCCTTAGTGTGATTCTGGGTATGTCATCTGGCAAGAAGTCTGTCAAGgtacaattcaactggttatatatgtttttgccttatagctttcctaccatctaccttcatttaacttcacttctcaaagttctttttctaccattatatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT