1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TCCTGCTGGGATAAATGCTCTATTTAGTCATGGACCACGGCGGTCAGCAGGTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactcatctttgactgtacttatattttgatattaccagttcatttcaaatgctttaggttccaaaaaaggggaaattatataatttggttggct...
species | Oryza sativa |
transcript | LOC_Os05g09360.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GTCTTGCTCGTGTGTATGCNCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGGEST: gi|29616296|gb|CB621308.1|CB621308
genomic: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
EST: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGGEST: gi|88905396|gb|CI712695.1|CI712695
genomic: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
EST: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGNGC-TTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGEST: gi|88670113|gb|CI724229.1|CI724229
genomic: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTG-GCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAG
EST: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGGEST: gi|88669953|gb|CI724069.1|CI724069
genomic: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
EST: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCACCCAAAAGGEST: gi|88672075|gb|CI726191.1|CI726191
genomic: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
EST: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGGEST: gi|88669249|gb|CI719387.1|CI719387
genomic: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
EST: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGGEST: gi|58611103|gb|CK038815.1|CK038815
genomic: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
EST: TGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGGEST: gi|88973622|gb|CI718050.1|CI718050
genomic: TGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
EST: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGGEST: gi|88665993|gb|CI716149.1|CI716149
genomic: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
EST: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGGEST: gi|88667639|gb|CI722378.1|CI722378
genomic: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
EST: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGGEST: gi|88668494|gb|CI722056.1|CI722056
genomic: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
EST: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTT ATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
genomic: GTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactc ... tcccttgcagATCGTGGCCTTTGCGTGTGGACTTGTGCATTACAAGTCTTCAGCCAAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGCTGGGATAAATGCTCTATTTAGTCATGGACCACGGCGGTCAGCAGGTCTTGCTCGTGTGTATGCGCTGTGGAATATTACATCATTGGTTAATGTTgtgagtactcatctttgactgtacttatattttgatattaccagttcatttcaaatgctttaggttccaaaaaaggggaaattatataatttggttggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa