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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCAAGAAGTAACTGGATTGGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAAgtattagcttctggaaactttacatttcctacgcattcatttttgttccatttgctaatgctgttactatttggtttcacactagataaatgcccttgct...

Basic information

species Oryza sativa
transcript LOC_Os04g14654.1
intron # 18
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g14654.3 (Oryza sativa), 5'ss of exon 18
lower sequence: GRMZM2G003734_T01 (Zea mays), 5'ss of exon 18
GAATCAAGAAGTAACTGGATTGGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAAgtattagcttctggaaactttacatttcctacgcattcatttttgttccatttgctaatgctgttactatttggtttcacactagataaatgcccttgct------
||||||||||| || ||| ||||||||||||| || || |||||||||||||| ||||||||||| |||||||||||  |||| ||| ||||| || | ||  |||     || ||||| ||||||| |||||   |   |||||||||| |   |     |  |||   |      
GAATCAAGAAGCAATTGGGTTGGTATTACAAGAGCACTGCAGCTTATAGTTGACGTAAATGATACAGCAAAgtattaa-ttcttgaagctttatatatgctttgca-----ttatgttctatttgctcatgctacaagcgtttggtttcatatatgcatggtcacctaaatactgcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163929156|gb|EG710989.1|EG710989
EST:     GGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAA                         CCCTAGTGATATATCATACATATTTTCTGGATACGCCCCTCTCAGTATTCG
genomic: GGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAAgtattagctt ... ccgttctcagCCCTAGTGATATATCATACATATTTTCTGGATACGCCCCTCTCAGTATTCG
EST: gi|58603195|gb|CK013723.1|CK013723
EST:     GGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAA                         CCCTAGTGATATATCATACATATTTTCTGGATACGCCCCTCTCAGTATTCG
genomic: GGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAAgtattagctt ... ccgttctcagCCCTAGTGATATATCATACATATTTTCTGGATACGCCCCTCTCAGTATTCG
EST: gi|163917728|gb|EG711274.1|EG711274
EST:     GGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAA                         CCCTAGGGATATATCATACATATTTTCTGGATACGCCCCTCTCAGTATTCG
genomic: GGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAAgtattagctt ... ccgttctcagCCCTAGTGATATATCATACATATTTTCTGGATACGCCCCTCTCAGTATTCG
EST: gi|28298184|gb|CB238414.1|CB238414
EST:     GGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAA                         CCCTAGTGATATATCATACATATTTTCTGGATACGCCCCTCTCAGTATTCG
genomic: GGTATTACAAGGGCTCTACAGCTTATAGTTGATGTAAATGATACTGCAAAgtattagctt ... ccgttctcagCCCTAGTGATATATCATACATATTTTCTGGATACGCCCCTCTCAGTATTCG