Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGgtatgttctttcaaactaagaatgtgaacaagtttttaagtacaaatgcacactccaattcttgaaaataacttgcaagttctatgataggttcatttct...

Basic information

species Oryza sativa
transcript LOC_Os04g09860.2
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88490129|gb|CI427401.1|CI427401
EST:     GGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAG                         GTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTG
genomic: GGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGgtatgttctt ... atattgatagGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTG
EST: gi|8324375|gb|AU091531.1|AU091531
EST:     GGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAG                         GTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTG
genomic: GGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGgtatgttctt ... atattgatagGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTG
EST: gi|88516814|gb|CI442470.1|CI442470
EST:     GGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAG                         GTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTG
genomic: GGTTCTCAATACTATTCCATCAAATCAACCGATAGAGAAAGCAGAGgtatgttctt ... atattgatagGTATTACAGTCGAGGAGTTATCCATTATTTGTCCCATGGAAAGGTGGTGTG