1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
TTTATTGATGAAGCGTGCCATCAAATCGAGCGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGgtacgtgaatggaatgcattcatcatctctgtcagcatggtgttatgatgtactgccactttagatattctctctctctctctctctctgtgcacgcacg...
species | Oryza sativa |
transcript | LOC_Os03g42750.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: CGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAG ATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGEST: gi|58665096|gb|CK053782.1|CK053782
genomic: CGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGgtacgtgaat ... ttgcatgtagATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAG
EST: CGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAG ATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGEST: gi|58680504|gb|CK069191.1|CK069191
genomic: CGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGgtacgtgaat ... ttgcatgtagATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAG
EST: CGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAG ATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGEST: gi|58604329|gb|CK014857.1|CK014857
genomic: CGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGgtacgtgaat ... ttgcatgtagATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAG
EST: CGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAG ATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAGEST: gi|29627167|gb|CB632178.1|CB632178
genomic: CGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGgtacgtgaat ... ttgcatgtagATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAG
EST: CGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAG ATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAG
genomic: CGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGgtacgtgaat ... ttgcatgtagATTTGCTGTCCTTGCATCACGAATGGAGCAATATATTCAAGGGCAATCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTATTGATGAAGCGTGCCATCAAATCGAGCGCAATGAAAGAAATGTACGGCAGACAGGAATACTAGCCTACATTCCCAGgtacgtgaatggaatgcattcatcatctctgtcagcatggtgttatgatgtactgccactttagatattctctctctctctctctctctgtgcacgcacg
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAA