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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactcagtcgaatgtttgctcaaatccgaaacagttatgacgcgtaccgcagtactacaccagaactaattccattctcgtaaacag

Basic information

species Oryza sativa
transcript LOC_Os01g09320.1
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86519891|gb|CI160097.1|CI160097
EST:     CGTAATCTCTGGAGCTGTCCGTGTCCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|88990345|gb|CI107771.1|CI107771
EST:     GAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: GAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|29668943|gb|CB665218.1|CB665218
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|58689010|gb|CK077697.1|CK077697
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|218502213|gb|FG961004.1|FG961004
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|29640538|gb|CB645547.1|CB645547
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|58668327|gb|CK057013.1|CK057013
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|58604549|gb|CK015077.1|CK015077
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|86594283|gb|CI251155.1|CI251155
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|29642463|gb|CB647470.1|CB647470
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|87040607|gb|CI195229.1|CI195229
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|218493259|gb|FG949070.1|FG949070
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|88198812|gb|CI197209.1|CI197209
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|58671293|gb|CK059979.1|CK059979
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|29630820|gb|CB635829.1|CB635829
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|18388384|gb|BM421582.1|BM421582
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|88961240|gb|CI096644.1|CI096644
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|29663066|gb|CB659341.1|CB659341
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|88985680|gb|CI016389.1|CI016389
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|29625639|gb|CB630650.1|CB630650
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|38474181|gb|CF958313.1|CF958313
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|58673473|gb|CK062159.1|CK062159
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAG
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAG
EST: gi|89184779|gb|CI048335.1|CI048335
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|89197307|gb|CI052037.1|CI052037
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|55410640|gb|CV723016.1|CV723016
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|87041398|gb|CI196020.1|CI196020
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|29645566|gb|CB650573.1|CB650573
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|29626361|gb|CB631372.1|CB631372
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|15858197|gb|BI811009.1|BI811009
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|87041092|gb|CI195714.1|CI195714
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|89195350|gb|CI051463.1|CI051463
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|29681753|gb|CB678028.1|CB678028
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|29626362|gb|CB631373.1|CB631373
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|86518820|gb|CI159026.1|CI159026
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|218502862|gb|FG946696.1|FG946696
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTA
EST: gi|88248955|gb|CI248804.1|CI248804
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|88197857|gb|CI197707.1|CI197707
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|58679004|gb|CK067691.1|CK067691
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGGCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|218497744|gb|FG966597.1|FG966597
EST:     TGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGACAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|88198739|gb|CI198589.1|CI198589
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|86428472|gb|CI075153.1|CI075153
EST:     TGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: TGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|88974407|gb|CI020059.1|CI020059
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|8956808|gb|BE230611.1|BE230611
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGNCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|86519039|gb|CI159245.1|CI159245
EST:     CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|89188222|gb|CI115471.1|CI115471
EST:     CACGAGGATATGCTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
EST: gi|14192241|gb|AU184452.1|AU184452
EST:     CTTCTAGCTGCCT                         CGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA
genomic: CTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 38

TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactc ... tcgtaaacagCGGAAACACTAGCTGATCAGGCCACTCAGGAGAACTTTGAGAAGGGATCGATCTTCCCGCCCTTCACAAACATCAGAAAGATTTCTGCTCGCATTGCCGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGAACAATGCCTACATTTTCCCTGGATTCGGCCTCGGTGTCGTAATCTCTGGAGCTGTCCGTGTTCACGAGGATATGCTTCTAGCTGCCTgtaagtactcagtcgaatgtttgctcaaatccgaaacagttatgacgcgtaccgcagtactacaccagaactaattccattctcgtaaacag

- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC