1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CTTCTTTAGTAAGCTTGTGAGAGACTCAATGGAGTTACAAGCTCAGGAAGCACTCAACAACATCGAAAATCGAGAAATTGATATCATGAAGCCACTTGAGgtttctggaattaatcctccccacctttccgaagttcttttaaaactttctaattattgaaacttgatttcgtcatataagctaaatattttgttgcag
species | Oryza sativa |
transcript | LOC_Os12g42300.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: CACTCAACAACATCGAAAATCGAGAAATTGATATCATGAAGCCACTTGAG ATAAGAATATCAGACTTGGTTGAGCGCAATGGGAATGGTTCAAGAATGATAEST: gi|29684628|gb|CB680903.1|CB680903
genomic: CACTCAACAACATCGAAAATCGAGAAATTGATATCATGAAGCCACTTGAGgtttctggaa ... tttgttgcagATAAGAATATCAGACTTGGTTGAGCGCAATGGGAATGGTTCAAGAATGATA
EST: CACTCAACAACATCGAAAATCGAGAAATTGATATCATGAAGCCACTTGAG ATAAGAATATCAGACTTGGTTGAGCGCAATGGGAATGGTTCAAGAATGATAEST: gi|29684627|gb|CB680902.1|CB680902
genomic: CACTCAACAACATCGAAAATCGAGAAATTGATATCATGAAGCCACTTGAGgtttctggaa ... tttgttgcagATAAGAATATCAGACTTGGTTGAGCGCAATGGGAATGGTTCAAGAATGATA
EST: AGAAATTGATATCATGAAGCCACTTGAG ATAAGAATATCAGACTTGGTTGAGCGCAATGGGAATGGTTCAAGAATGATAEST: gi|58692395|gb|CK081082.1|CK081082
genomic: AGAAATTGATATCATGAAGCCACTTGAGgtttctggaa ... tttgttgcagATAAGAATATCAGACTTGGTTGAGCGCAATGGGAATGGTTCAAGAATGATA
EST: CACTCAACAACATCGAAAATCGAGAAATTGATATCATGAAGCCACTTGAG ATCAGAATATCAGACTTGGTTGAGCGCAATGGGAATGGTTCAAGAATGATA
genomic: CACTCAACAACATCGAAAATCGAGAAATTGATATCATGAAGCCACTTGAGgtttctggaa ... tttgttgcagATAAGAATATCAGACTTGGTTGAGCGCAATGGGAATGGTTCAAGAATGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTTTAGTAAGCTTGTGAGAGACTCAATGGAGTTACAAGCTCAGGAAGCACTCAACAACATCGAAAATCGAGAAATTGATATCATGAAGCCACTTGAGgtttctggaattaatcctccccacctttccgaagttcttttaaaactttctaattattgaaacttgatttcgtcatataagctaaatattttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC