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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCAATCACAATTTTCAGCGCTAGATAGTTCTTCACGGCTTGGACTAAAACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtatttctaaattcaactgttgtttctttctttctatgtactgttcccctttgctgagggccaatgttaccactaacaaaaaaggcatcactaata...

Basic information

species Oryza sativa
transcript LOC_Os12g06810.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g06810.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G167999_T02 (Zea mays), 5'ss of exon 16
TGGCCAATCACAATTTTCAGCGCTAGATAGTTCTTCACGGCTTGGACTAAAACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtatttctaaattcaactgttgtttctttctttctatgtactgttcccctttgctgagggcc--aatgttaccactaacaaaaaaggcatcactaata
||  ||||||||  | ||||  |||||||||||||| |||||||||||||| ||||||||||||   || || | | | ||||||||||| || | ||||| |||| | || ||||  | |||   | | | | |    |  | || | |  | || |  |       ||   ||||| |  ||     |  |    |  ||
TGCTCAATCACAGCTCTCAGTTCTAGATAGTTCTTCGCGGCTTGGACTAAAGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagt-tctcaaaatatagctgcattctatatttagacacatgctttcctacattacgaataaatgtaagaataccattg-caggggggaaaagtgtctta

upper sequence: LOC_Os12g06810.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G079022_T01 (Zea mays), 5'ss of exon 1
TGGCCAATCACAATTTTCAGCGCTAGATAGTTCTTCACGGCTTGGACTAAAACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtatttctaaattcaactgttgtttctttctttctatgtactgttcccctttgctgagggccaatgt-----taccac--taacaaaaaaggcatcactaata
||  ||||||||  | ||||  |||||||||||||| |||||||||||||| ||||||||||||   || || | | | ||||||||||| || | ||||| |||| | || ||||  | |||    |||| | |||  |   | ||||  |||    |  |    |||||     |||||   |     |   || |  | |    
TGCTCAATCACAGCTCTCAGTTCTAGATAGTTCTTCGCGGCTTGGACTAAAGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagt-tctcaaaatatagctgca--ttctatatttagacaca-tgttttcctacattacgaataaatgtaagaataccatgttcctgcaggggggaaaagtg---

upper sequence: LOC_Os12g06810.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G012154_T01 (Zea mays), 5'ss of exon 1
TGGCCAATCACAATTTTCAGCGCTAGATAGTTCTTCACGGCTTGGACTAAAACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtatttctaaattcaactgttgtttctttctttctatgtactgttcccctttgctgagggccaatgt-----taccac--taacaaaaaaggcatcactaata
||  ||||||||  | ||||  |||||||||||||| |||||||||||||| ||||||||||||   || || | | | ||||||||||| || | ||||| |||| | || ||||  | |||    |||| | |||  |  || ||||  |||    |  |    |||||     |||||   |     |   || |  | |    
TGCTCAATCACAGCTCTCAGTTCTAGATAGTTCTTCGCGGCTTGGACTAAAGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagt-tctcaaaatatagctgca--ttctatatttagacata-tgttttcctacattacgaataaatgtaagaataccatgttcctgcaggggggaaaagtg---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87027399|gb|CI270074.1|CI270074
EST:     AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|87005839|gb|CI316258.1|CI316258
EST:     CAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGGTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: CAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|88995547|gb|CI022870.1|CI022870
EST:     AAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|58685416|gb|CK074103.1|CK074103
EST:     AACCATGGCCAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|88840572|gb|CI080026.1|CI080026
EST:     TGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: TGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|86497544|gb|CI140177.1|CI140177
EST:     ACCATGGCAAAAATTGAAACCTTCTGTAGACG-TATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: ACCATGGCAAAAATTGAAACCTTCTGTAGA-GATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|86885229|gb|CI316989.1|CI316989
EST:     TTGTGTAACAGCCAG                         GTTTTGTCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: TTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|86257359|gb|CI004177.1|CI004177
EST:     AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|27554489|gb|CA998389.1|CA998389
EST:     AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|86875063|gb|CI322284.1|CI322284
EST:     AACCATGGCAAAAATT-AAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         G-TTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|29666969|gb|CB663244.1|CB663244
EST:     AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|29683579|gb|CB679854.1|CB679854
EST:     AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|58600096|gb|CK010624.1|CK010624
EST:     AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTAGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATG
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATG
EST: gi|86477800|gb|CI120433.1|CI120433
EST:     AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|29670914|gb|CB667189.1|CB667189
EST:     AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|87017850|gb|CI273872.1|CI273872
EST:     CCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: CCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|88842028|gb|CI081284.1|CI081284
EST:     ACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: ACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|88969566|gb|CI383072.1|CI383072
EST:     AACCTTCTGTAGAGATATTTTGTAACACCCAG                         GTTTTCGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|86481704|gb|CI124337.1|CI124337
EST:     AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: gi|88960789|gb|CI382470.1|CI382470
EST:     TGTGTAACAGCCAG                         GTTTTGGCACCCGAAATGAGCTTGGCCACAGTCCGGGCTTATGTCTGGAAG
genomic: TGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG