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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGGATCCTGCCAACAGGCTAGGGTCCTACGAGGGAGCCAATGAGATAAAAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaactagctatatcctgctgctatacatgagtgtttaatttggatgatgagatcctaatgtagaatgtgtgtgtgtgaatgaaatcaataatgcattgtag

Basic information

species Oryza sativa
transcript LOC_Os12g01140.5
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88505780|gb|CI433286.1|CI433286
EST:     TTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: TTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|58612523|gb|CK040235.1|CK040235
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86867220|gb|CI337758.1|CI337758
EST:     CTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: CTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88276645|gb|CI397447.1|CI397447
EST:     CTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: CTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88477917|gb|CI415188.1|CI415188
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86482520|gb|CI125153.1|CI125153
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86889831|gb|CI333482.1|CI333482
EST:     GTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: GTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88278005|gb|CI398807.1|CI398807
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCGTATACGCGCCACG                         GCGCCTCCAAAGGTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86833711|gb|CI337285.1|CI337285
EST:     TATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: TATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88476858|gb|CI414129.1|CI414129
EST:     GACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: GACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88465516|gb|CI522267.1|CI522267
EST:     CCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: CCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86886447|gb|CI322679.1|CI322679
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88902162|gb|CI374770.1|CI374770
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88376071|gb|CI530575.1|CI530575
EST:     TACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: TACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|89190812|gb|CI392665.1|CI392665
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88485466|gb|CI422737.1|CI422737
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86911449|gb|CI317660.1|CI317660
EST:     AAGGACATCCCTTTTTCCCTGGTATAAATTGGCCTCTTATACGCCCCACG                         GCCCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86889185|gb|CI315796.1|CI315796
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86860880|gb|CI326477.1|CI326477
EST:     AA-GACATCCCTTTGTCCGT-GTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88252118|gb|CI350546.1|CI350546
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88280630|gb|CI401828.1|CI401828
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCNCG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86878327|gb|CI319589.1|CI319589
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88513674|gb|CI441180.1|CI441180
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86481030|gb|CI123663.1|CI123663
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88482164|gb|CI419435.1|CI419435
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|33680725|gb|CF308964.1|CF308964
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACGTGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86875912|gb|CI325499.1|CI325499
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|86893491|gb|CI313505.1|CI313505
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
EST: gi|88279055|gb|CI400055.1|CI400055
EST:     AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACG                         GCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG
genomic: AAGGACATCCCTTTTTCCGTGGTATAAATTGGCCTCTTATACGCGCCACGgtaacgtaac ... tgcattgtagGCGCCTCCAAAGTTGGAGATCCCACTATTTTCCAAGGATGACATGGAGAAG