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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATGTTGTATGGTTATACACCTTTTAGAGGAAAAACGAGGCAACGGACATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaatcaagcgtcatttttttttaagttggagaagttaaatcagtttgagttttcag

Basic information

species Oryza sativa
transcript LOC_Os12g01140.4
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g01140.1 (Oryza sativa), 5'ss of exon 21
lower sequence: GRMZM2G001457_T01 (Zea mays), 5'ss of exon 2
TGAAATGTTGTATGGTTATACACCTTTTAGAGGAAAAACGAGGCAACGGACATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaatcaagcgtcatttttttttaagttggagaagttaaatcagtttg-agttttcag-------------
||| ||||| |||||||||||||| || ||||| ||||| || ||| ||||||||||||||||  ||||||||||||||||||||||||| || |||  ||||| |||   || | |  | || |  || ||  | |  ||   |   ||||| | | |  |              
TGAGATGTTATATGGTTATACACCGTTCAGAGGGAAAACAAGACAAAGGACATTTGCTAATATTCTGCACAAGGATATCAGATTTCCTGCGAGCATACAGgtaa-taataaaaacatt-tattctagtaggtgagcgttgtggcaaatgtttgtaatgtatatatgttaattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29644412|gb|CB649419.1|CB649419
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|25806002|gb|CA761963.1|CA761963
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGACCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|66913937|gb|CX100785.1|CX100785
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29621738|gb|CB626749.1|CB626749
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|58695632|gb|CK084319.1|CK084319
EST:     CATTTGTTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29623925|gb|CB628936.1|CB628936
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29630467|gb|CB635476.1|CB635476
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCNGAGGCAGCTAATGTATAGGTTGCTACATAGGGACCC
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGC-GAGGCAGCTAATGTATAGGTTGCTACATAGGGATCC
EST: gi|29641401|gb|CB646408.1|CB646408
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29663823|gb|CB660098.1|CB660098
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|58689894|gb|CK078581.1|CK078581
EST:     CAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29678745|gb|CB675020.1|CB675020
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|86896123|gb|CI330083.1|CI330083
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATA-GGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|18386007|gb|BM419206.1|BM419206
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGACCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|88299110|gb|CI570080.1|CI570080
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGGGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|88279055|gb|CI400055.1|CI400055
EST:     ATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGGTAATGTATAGGTTGCTACATAGGGATCCT
genomic: ATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|86482520|gb|CI125153.1|CI125153
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|86885168|gb|CI316928.1|CI316928
EST:     CATTTGCTAATATCTTGCACAA-GATATCAGATTTCCTG-TAGTATATCG                         TTCAGCCTAGC-GCGAGCCAGCTAATGTATAGGTTGCTACATA-GGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|86417133|gb|CI031342.1|CI031342
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29630120|gb|CB635129.1|CB635129
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGACCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29634078|gb|CB639087.1|CB639087
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29672021|gb|CB668296.1|CB668296
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|88902162|gb|CI374770.1|CI374770
EST:     CAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|33680725|gb|CF308964.1|CF308964
EST:     AGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: AGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|58695041|gb|CK083728.1|CK083728
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29623926|gb|CB628937.1|CB628937
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|86481030|gb|CI123663.1|CI123663
EST:     CTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGNCAGCTAATGTATAGGTTGCTACATAGGGGTCCT
genomic: CTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29624138|gb|CB629149.1|CB629149
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29646711|gb|CB651718.1|CB651718
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|88262034|gb|CI365610.1|CI365610
EST:     CATTTCCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATTTATAGGTTGCTACATA-GGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|33680724|gb|CF308963.1|CF308963
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAG
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAG
EST: gi|29622724|gb|CB627735.1|CB627735
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGACCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29674379|gb|CB670654.1|CB670654
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|86890159|gb|CI321336.1|CI321336
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATC-                         GTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT
EST: gi|29677072|gb|CB673347.1|CB673347
EST:     CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCG                         GTCAGCCTAGCGGCGAGGCAGCTAATATATAGGTTGCTACATAGGGATCCT
genomic: CATTTGCTAATATCTTGCACAAGGATATCAGATTTCCTGCTAGTATATCGgtaagtaaat ... gagttttcagGTCAGCCTAGCGGCGAGGCAGCTAATGTATAGGTTGCTACATAGGGATCCT