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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATTGAAATGAGGGTCTGGCAGTCAGGCCAGTTTGCTATGGCCCAAACATTTTCGCATGTGTTACAAAAGGCTTGGTTGCTACCAGTTGAGCAAATGgtatgctacatttgctgtttattttttagcaaagataaatgctgtttattgaggcattcatgtgatgaaatctgcttgattgctgttaacattcattccag

Basic information

species Oryza sativa
transcript LOC_Os11g47320.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g47320.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G343225_T01 (Zea mays), 5'ss of exon 3
GGACAT-TGAAATGAGGGTCTGGCAGTCAGGCCAGTTTGCTATGGCCCAAACATTTTCGCATGTGTTACAAAAGGCTTGGTTGCTACCAGTTGAGCAAATGgtatgctacatttgctgtttattttttagcaaagataaatgctgtttattgaggcattcatgtgatgaaatctgcttgattgctgttaacattcattccag
 ||||  ||||| |||| | |||||||||||||||| |||||| ||||||||| ||||     |||||||||| ||||||||| | | || |||  | |||||||| ||  ||||  ||| |  | ||  |                  |||||| ||||| ||| |||||  |||||||||| | | |||||||||| |||
-GACACCTGAAAAGAGGTTTTGGCAGTCAGGCCAGTCTGCTATTGCCCAAACAATTTCATTACTGTTACAAAAAGCTTGGTTGTTTCAAGCTGACAATATGgtatgtta-gtttgtcgttgacctgttgtc------------------ttgaggtattcaagtggtgaaacttgcttgattgttttcaacattcatttcag

upper sequence: LOC_Os11g47320.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G163210_T02 (Zea mays), 5'ss of exon 1
GGACAT-TGAAATGAGGGTCTGGCAGTCAGGCCAGTTTGCTATGGCCCAAACATTTTCGCATGTGTTACAAAAGGCTTGGTTGCTACCAGTTGAGCAAATGgtatgctacatttgctgtttattttttagcaaagataaatgctgtttattgaggcattcatgtgatgaaatctgcttgattgctgttaacattcattccag
 ||||  ||| | |||| |||||||||||||||||| |||||| ||||||||| ||||     |||||||||| ||||||||| | | || |||  | |||||||| ||  ||||| ||| |  | ||  |                  |||||| ||||| ||| |||||  ||||||| || | | |||||||||| |||
-GACACCTGAGAAGAGGTTCTGGCAGTCAGGCCAGTCTGCTATTGCCCAAACAATTTCATTACTGTTACAAAAAGCTTGGTTGTTTCAAGCTGACAATATGgtatgtta-gtttgccgttgacctgttgtc------------------ttgaggtattcaagtggtgaaacttgcttgactgttttcaacattcatttcag

upper sequence: LOC_Os11g47320.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G389629_T02 (Zea mays), 5'ss of exon 7
GGACAT-TGAAATGAGGGTCTGGCAGTCAGGCCAGTTTGCTATGGCCCAAACATTTTCGCATGTGTTACAAAAGGCTTGGTTGCTACCAGTTGAGCAAATGgtatgctacatttgctgtttattttttagcaaagataaatgctgtttattgaggcattcatgtgatgaaatctgcttgattgctgttaacattcattccag
 ||||  | ||| |||| |||||||||||||||||| |||||| ||||||||| ||||     |||||||||| ||||||||| | | || |||  | |||||||| ||  || || ||| |  | ||  |                  |||||| ||||| ||| |||||  ||||||| || | | |||||||||| |||
-GACACCTAAAAAGAGGTTCTGGCAGTCAGGCCAGTCTGCTATTGCCCAAACAATTTCATTACTGTTACAAAAAGCTTGGTTGTTTCAAGCTGACAATATGgtatgtta-gttcgccgttgacctgttgtc------------------ttgaggtattcaagtggtgaaacttgcttgactgttttcaacattcatttcag