1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
GGACATCATCTGTTTCCAAAAATCACCTATACCTGATAGTGACACTCAAATGCGTTATCCAGATGTCCCTTCGTATCTGGAGTATGTTCATAATAGGCAGgtatggtgcttatatttcccaacttgattccaattctttgtactgtaggtacaaggcgtttatttctttgttatttatatttttgtctgtaagctaattg...
species | Oryza sativa |
transcript | LOC_Os11g36470.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: TGCGTTATCCAGATGTCCCTTCGTATCTGGAGTATGTTCATAATAGGCAG GTTGTGCACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGEST: gi|58655314|gb|CK043994.1|CK043994
genomic: TGCGTTATCCAGATGTCCCTTCGTATCTGGAGTATGTTCATAATAGGCAGgtatggtgct ... tttactgcagGTTGTGCACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTG
EST: TGCGTTATCCAGATGTCCCTTCGTATCTGGAGTATGTTCATAATAGGCAG GTTGTGCACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGEST: gi|58674845|gb|CK063532.1|CK063532
genomic: TGCGTTATCCAGATGTCCCTTCGTATCTGGAGTATGTTCATAATAGGCAGgtatggtgct ... tttactgcagGTTGTGCACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTG
EST: TTCGTATCTGGAGTATGTTCATAATAGGCAG GTTGTGCACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTGEST: gi|58661692|gb|CK050372.1|CK050372
genomic: TTCGTATCTGGAGTATGTTCATAATAGGCAGgtatggtgct ... tttactgcagGTTGTGCACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTG
EST: TGCGTTATCCAGATGTCCCTTCGTATCTGGAGTATGTTCATAATAGGCAG GTTGTGCACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTG
genomic: TGCGTTATCCAGATGTCCCTTCGTATCTGGAGTATGTTCATAATAGGCAGgtatggtgct ... tttactgcagGTTGTGCACTTTCGGTTATTGGAGAAACCAAAGGATGATGACTTTTCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACATCATCTGTTTCCAAAAATCACCTATACCTGATAGTGACACTCAAATGCGTTATCCAGATGTCCCTTCGTATCTGGAGTATGTTCATAATAGGCAGgtatggtgcttatatttcccaacttgattccaattctttgtactgtaggtacaaggcgtttatttctttgttatttatatttttgtctgtaagctaattg
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