1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
ACAAAACAACAAGACTGGTAACTTTGCAGAATTGTGCAACGATCCGAAGGCAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGGgtatgccgataaccgtcatggaaattattatttaagttaacttctattcatgattaatgacaattcataagacattattcttgtgccatgcag
species | Oryza sativa |
transcript | LOC_Os11g35400.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: CAAGAATGTACATAGAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGG TTGAGAGGATTTGAGATGCTAAAGGCAATTCACCTAGAGACAACGCCATTCEST: gi|66947111|gb|AU311955.1|AU311955
genomic: CAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGGgtatgccgat ... tgccatgcagTTGAGAGGATTTGAGATGCTAAAGGCAATTCACCTAGAGACAACGCCATTC
EST: CAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGG TTGAGAGGATTTGAGATGCTAAAGGCAATTCACCTAGAGACAACGCCATTCEST: gi|88476345|gb|CI413616.1|CI413616
genomic: CAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGGgtatgccgat ... tgccatgcagTTGAGAGGATTTGAGATGCTAAAGGCAATTCACCTAGAGACAACGCCATTC
EST: CAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGG TTGAGAGGATTTGAGATGCTAAAGGCAATTCACCTAGAGACAACGCCATTCEST: gi|86501811|gb|CI144444.1|CI144444
genomic: CAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGGgtatgccgat ... tgccatgcagTTGAGAGGATTTGAGATGCTAAAGGCAATTCACCTAGAGACAACGCCATTC
EST: CAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGG TTGAGAGGATTTGAGATGCTAAAGGCAATTCACCTAGAGACAACGCCATTCEST: gi|86501867|gb|CI144500.1|CI144500
genomic: CAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGGgtatgccgat ... tgccatgcagTTGAGAGGATTTGAGATGCTAAAGGCAATTCACCTAGAGACAACGCCATTC
EST: CAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGG TTGAGAGGATTTGAGATGCTAAAGGCAATTCACCTAGAGACAACGCCATTC
genomic: CAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGGgtatgccgat ... tgccatgcagTTGAGAGGATTTGAGATGCTAAAGGCAATTCACCTAGAGACAACGCCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAAACAACAAGACTGGTAACTTTGCAGAATTGTGCAACGATCCGAAGGCAAGAATGTACATACAGGATGAGCTAAACAAAACTGGCAAAAGACTAGGGgtatgccgataaccgtcatggaaattattatttaagttaacttctattcatgattaatgacaattcataagacattattcttgtgccatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG