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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGGGCTTCAGGCCCGTGTTAATGCACTGGGATCAACTGCCACTGTTCTCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaacatttctgacttcttactggatgtaatgcacatatcaatgtctagtagagtttgtggttttggtcatctgaagccaaagctttgctcatgacaaccaatgcag

Basic information

species Oryza sativa
transcript LOC_Os11g03730.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g03730.3 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G077299_T03 (Zea mays), 5'ss of exon 16
AACTGGGCTTCAGGCCCGTGTTAATGCACTGGGATCAACTGCCACTGTTCTCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaacatttctg-----acttcttactggatgtaatgcacatatcaatgtctagtagagtttgtg---gttttggtcatctgaagccaaagctttgctcatgacaaccaatgcag----------------------------
|| |||||| |||||| || | || || ||||||||||| |||||||||||||||||     ||||||||||||| ||||| || || ||||| |  |||||||     |   | ||      ||| ||||  |      ||      | ||||   |   |  | |  |    | || ||  ||||    |         ||  |||     |||||                              
AAGTGGGCTCCAGGCCAGTATCAACGCTCTGGGATCAACCGCCACTGTTCTCACATCAGCAGATGTGATGGATGAAAACTCCTTCAGCAACCCAACCAAGgtaaatctgcccctttgtttgcgcttattacctgcgtctgtgtgtgcctgaatggtcatatgtttctcagcgcatatttgtgctctgttttcggtttcgatcttgtgattctgaatgcgaaacctgacggtgaacaattgcgcggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88485297|gb|CI422568.1|CI422568
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88456633|gb|CI547349.1|CI547349
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88448100|gb|CI541686.1|CI541686
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86861306|gb|CI328086.1|CI328086
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29665627|gb|CB661902.1|CB661902
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86833320|gb|CI334915.1|CI334915
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86834656|gb|CI340773.1|CI340773
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29636384|gb|CB641393.1|CB641393
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29674665|gb|CB670940.1|CB670940
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29677794|gb|CB674069.1|CB674069
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88250209|gb|CI348439.1|CI348439
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29627661|gb|CB632672.1|CB632672
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88443257|gb|CI549415.1|CI549415
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|89178274|gb|CI391453.1|CI391453
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88265561|gb|CI376463.1|CI376463
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGGCCAGCTTTCCAATCCAGCAGAGGCAGATGCAAG
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAA-GCCAGCTTTCCAATGCAGCAGA-GCAGATGCAAG
EST: gi|86836733|gb|CI347356.1|CI347356
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|3769142|gb|AU033169.1|AU033169
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86882498|gb|CI327250.1|CI327250
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88840286|gb|CI079740.1|CI079740
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|87008612|gb|CI315070.1|CI315070
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86862749|gb|CI331641.1|CI331641
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATTCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86871089|gb|CI328291.1|CI328291
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88298209|gb|CI558614.1|CI558614
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88226401|gb|CI226317.1|CI226317
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29624426|gb|CB629437.1|CB629437
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|38476158|gb|CF960291.1|CF960291
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86851993|gb|CI317755.1|CI317755
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|55439305|gb|CV732956.1|CV732956
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|89177752|gb|CI390931.1|CI390931
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88981807|gb|CI027385.1|CI027385
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|58030521|gb|CX728064.1|CX728064
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86853869|gb|CI329315.1|CI329315
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86833238|gb|CI334833.1|CI334833
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88832903|gb|CI369793.1|CI369793
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86868736|gb|CI333113.1|CI333113
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86418809|gb|CI053610.1|CI053610
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86901333|gb|CI326176.1|CI326176
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29646542|gb|CB651549.1|CB651549
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88432090|gb|CI562921.1|CI562921
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29628284|gb|CB633295.1|CB633295
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86869108|gb|CI335675.1|CI335675
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88445217|gb|CI552270.1|CI552270
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88469824|gb|CI407095.1|CI407095
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86884472|gb|CI337040.1|CI337040
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86905528|gb|CI285491.1|CI285491
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86825583|gb|CI361756.1|CI361756
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATTCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29681803|gb|CB678078.1|CB678078
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29624428|gb|CB629439.1|CB629439
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29632194|gb|CB637203.1|CB637203
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88505565|gb|CI433071.1|CI433071
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29627934|gb|CB632945.1|CB632945
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86832768|gb|CI345182.1|CI345182
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88267289|gb|CI379224.1|CI379224
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88271401|gb|CI387454.1|CI387454
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88966703|gb|CI365926.1|CI365926
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86853822|gb|CI329268.1|CI329268
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29644766|gb|CB649773.1|CB649773
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86862150|gb|CI330709.1|CI330709
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86851229|gb|CI312630.1|CI312630
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86852897|gb|CI323206.1|CI323206
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88442491|gb|CI544058.1|CI544058
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|88441293|gb|CI538736.1|CI538736
EST:     TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGGATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|29638132|gb|CB643141.1|CB643141
EST:     TCTCATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCGGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
EST: gi|86481297|gb|CI123930.1|CI123930
EST:     TCACATCCAGCAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAG                         GTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC
genomic: TCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 66 (downstream exon)
Score: 55

AACTGGGCTTCAGGCCCGTGTTAATGCACTGGGATCAACTGCCACTGTTCTCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaac ... accaatgcagGTTGTTCCTGTCAAAAGCCAGCTTTCCAATGCAGCAGAGCAGATGCAAGTCACGCTTGCTCCTCACTCTTTCTCCTCATTCGATCTTGCGCTTGCCCAGT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACTGGGCTTCAGGCCCGTGTTAATGCACTGGGATCAACTGCCACTGTTCTCACATCCAGTAATGTGATGGATGAGAACTCTTTTAGTAACCCGAATAAGgtaagcaaacatttctgacttcttactggatgtaatgcacatatcaatgtctagtagagtttgtggttttggtcatctgaagccaaagctttgctcatgacaaccaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA