1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
AGCTCAAGTGGCTTCGGTCCGCTACTGGATCTGCTGAGAAAGAATATGAGATAAATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGgttaggctgctctgaactccaggattggtcatgctatgctgccatcaccatcatgtgttcattacattttttttggttaattcag
species | Oryza sativa |
transcript | LOC_Os10g41590.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: ATAAATCAGNNNNNNNTAGCTGAGCTAAAAAAGGAGCTAGAGCGTGAGAG AAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGTEST: gi|86890240|gb|CI321417.1|CI321417
genomic: ATAAATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGgttaggctgc ... gttaattcagAAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGT
EST: TGAGCTAAAAAT-GAGGCTAGAGCCTGAGAG AAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGTTGAAAAACGAAGTEST: gi|86430665|gb|CI083088.1|CI083088
genomic: TGAGCTAAAAATGGA-GCTAGAGCGTGAGAGgttaggctgc ... gttaattcagAAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGT
EST: CTAAAAATGGAGCTAGAGCGTGAGAG AAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGTEST: gi|29681303|gb|CB677578.1|CB677578
genomic: CTAAAAATGGAGCTAGAGCGTGAGAGgttaggctgc ... gttaattcagAAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGT
EST: ATAAATCAGNNNNNNNTAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAG AAATGAGAGGATAAAGCTTGAGGAAGGATACGAAGAGGTGAAAAACGAAGTEST: gi|87028074|gb|CI257234.1|CI257234
genomic: ATAAATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGgttaggctgc ... gttaattcagAAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGT
EST: ATAAATCAGNNNNNNNTAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAG AAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGTEST: gi|86437107|gb|CI118829.1|CI118829
genomic: ATAAATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGgttaggctgc ... gttaattcagAAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGT
EST: ATAAATCAGNNNNNNNTAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAG AAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGTEST: gi|86479463|gb|CI122096.1|CI122096
genomic: ATAAATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGgttaggctgc ... gttaattcagAAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGT
EST: ATAAATCAGNNNNNNNTAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAG AAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGT
genomic: ATAAATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGgttaggctgc ... gttaattcagAAATGAGAGGATAAAGCTTGAGGAAGAATACGAAGAGGTGAAAAACGAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCAAGTGGCTTCGGTCCGCTACTGGATCTGCTGAGAAAGAATATGAGATAAATCAGAAAAAAATAGCTGAGCTAAAAATGGAGCTAGAGCGTGAGAGgttaggctgctctgaactccaggattggtcatgctatgctgccatcaccatcatgtgttcattacattttttttggttaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT