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GAGCATCATTTCTCAGGGTGGTTATATTTATGTCTGTGGTGATGCAAAGGGCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAGgtattgtttgggtatatcattacctttggtacctgttagattcagttaattcttagtgggaggatgcagtggtgctctacctctagaaagtttgcacttt...
species | Oryza sativa |
transcript | LOC_Os09g38620.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GTACACCGCACACTACACACCATTGTGCAGGAACAG GGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATGEST: gi|88907062|gb|CI376134.1|CI376134
genomic: GTACACCGCACACTACACACCATTGTGCAGGAACAGgtattgtttg ... gaattttcagGGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATG
EST: GCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAG GGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATGEST: gi|27576413|gb|CA999107.1|CA999107
genomic: GCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAGgtattgtttg ... gaattttcagGGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATG
EST: GCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAG GGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATGEST: gi|27577734|gb|CB000429.1|CB000429
genomic: GCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAGgtattgtttg ... gaattttcagGGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATG
EST: GCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAG GGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATGEST: gi|88845199|gb|CI084124.1|CI084124
genomic: GCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAGgtattgtttg ... gaattttcagGGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATG
EST: GCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAG GGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATGEST: gi|163920722|gb|EG710029.1|EG710029
genomic: GCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAGgtattgtttg ... gaattttcagGGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATG
EST: GCATGGCATGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAG GGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCATATGEST: gi|88259632|gb|CI363925.1|CI363925
genomic: GCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAGgtattgtttg ... gaattttcagGGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATG
EST: GCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAG GGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATG
genomic: GCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAGgtattgtttg ... gaattttcagGGTTCTTTGGACAACTCAAACACAGAAAGCTATGTAAAGAGCTTGCAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCATCATTTCTCAGGGTGGTTATATTTATGTCTGTGGTGATGCAAAGGGCATGGCAAGAGATGTACACCGCACACTACACACCATTGTGCAGGAACAGgtattgtttgggtatatcattacctttggtacctgttagattcagttaattcttagtgggaggatgcagtggtgctctacctctagaaagtttgcacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgggag