1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
TGTTGTAGGAATATTGACAACCCAGAGGGTAATGATAGCCTCTGCTGATCTTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCAatatcctttgatctcagtctagcatctacttttcgtgtactcttttcctattttgttgtacaaattccgggtatcatggtattagctgttgccaactgtcattttttgttgatcacttaactactttgtac
species | Oryza sativa |
transcript | LOC_Os09g24260.1 |
intron # | 17 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCA TATCGCTCAATGTTGTGGGTTGGACCAGCACTTATCTTCTCTAGTGCAACTEST: gi|112785964|gb|EE591774.1|EE591774
genomic: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCAatatcctttg ... tactttgtacTATCGCTCAATGTTGTGGGTTGGACCAGCACTTATCTTCTCTAGTGCAACT
EST: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCA TATCGCTCAATGTTGTGGGTTGGACCAGCACTTATTTTCTCTAGTGCAACTEST: gi|29622597|gb|CB627608.1|CB627608
genomic: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCAatatcctttg ... tactttgtacTATCGCTCAATGTTGTGGGTTGGACCAGCACTTATCTTCTCTAGTGCAACT
EST: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCA TATCGCTCAATGTTGTGGGTTGGACCAGCACTTATCTTCTCTAGTGCAACTEST: gi|58664500|gb|CK053186.1|CK053186
genomic: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCAatatcctttg ... tactttgtacTATCGCTCAATGTTGTGGGTTGGACCAGCACTTATCTTCTCTAGTGCAACT
EST: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCA TATCGCTCAATGTTGTGGGTTGGACCAGCACTTATCTTCTCTAGTGCAACTEST: gi|29634394|gb|CB639403.1|CB639403
genomic: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCAatatcctttg ... tactttgtacTATCGCTCAATGTTGTGGGTTGGACCAGCACTTATCTTCTCTAGTGCAACT
EST: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCA TATCGCTCAATGTTGTGGGTTGGACCAGCACTTATCTTCTCTAGTGCAACTEST: gi|58669673|gb|CK058359.1|CK058359
genomic: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCAatatcctttg ... tactttgtacTATCGCTCAATGTTGTGGGTTGGACCAGCACTTATCTTCTCTAGTGCAACT
EST: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCA TATCGCTCAATGTTGTGGGTTGGACCAGCACTTATCTTCTCTAGTGCAACT
genomic: TTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCAatatcctttg ... tactttgtacTATCGCTCAATGTTGTGGGTTGGACCAGCACTTATCTTCTCTAGTGCAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGTAGGAATATTGACAACCCAGAGGGTAATGATAGCCTCTGCTGATCTTGACATACTTTCAAGCAGCTCAACAAAATATGACCGGGGTCTTCCATCAatatcctttgatctcagtctagcatctacttttcgtgtactcttttcctattttgttgtacaaattccgggtatcatggtattagctgttgccaactgtcattttttgttgatcacttaactactttgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA