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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGAGGTGATCCCCTTCTAAAGCTTATTGCTGTCGATTGGTTTAAGGCTGATGAGCGTTTTGATTCAGTTGCCTTACACCCCAAGAGCCTCGTTCAGgtaaaaaaggttacctgaccaccaccaatatcccaaagtaatgcaaccagctttttctctatcatgtttttatgtaactgagaatcaatatgcctttcaa...

Basic information

species Oryza sativa
transcript LOC_Os08g34060.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g34060.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G160927_T01 (Zea mays), 5'ss of exon 5
TGTTGGAGGTGATCCCCTTCTAAAGCTTATTGCTGTCGATTGGTTTAAGGCTGATGAGCGTTTTGATTCAGTTGCCTTACACCCCAAGAGCCTCGTTCAGgtaaaaaaggttacctgaccaccaccaatatcccaaagtaatgcaaccagctttttctctatcatgtttttatgtaact-gagaatcaatatgcct-ttcaa-
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TGTTGGCGGTGATCCACTTCTAGAGCTACTTGCGGTCGATTGGTTCAAAGTTAATGAACGCTTTGATTCAGTTGCCTTACATCCCAAAAGCCTTGTGCAAgtaagcttgtctga-taaactttaccattatccctcattgacg--ggcattagttacttaattgtgggcgtgattgcctcgatttttcttattcttgttcaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29630515|gb|CB635524.1|CB635524
EST:     CTGATGAGCGTTTTGATTCAGTTGCCTTACACCCCAAGAGCCTCGTTCAG                         TCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG
genomic: CTGATGAGCGTTTTGATTCAGTTGCCTTACACCCCAAGAGCCTCGTTCAGgtaaaaaagg ... tacattacagTCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG
EST: gi|29622067|gb|CB627078.1|CB627078
EST:     CTGATGAGCGTTTTGATTCAGTTGCCTTACACCCCAAGAGCCTCGTTCAG                         TCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG
genomic: CTGATGAGCGTTTTGATTCAGTTGCCTTACACCCCAAGAGCCTCGTTCAGgtaaaaaagg ... tacattacagTCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG
EST: gi|29623531|gb|CB628542.1|CB628542
EST:     CTGATGAGCGTTTTGATTCAGTTGCCTTACACCCCAAGAGCCTCGTTCAG                         TCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG
genomic: CTGATGAGCGTTTTGATTCAGTTGCCTTACACCCCAAGAGCCTCGTTCAGgtaaaaaagg ... tacattacagTCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG
EST: gi|14571409|gb|BI118777.1|BI118777
EST:     CTGATGAGCGTTTTGATTCAGTTGCCTTACACCCCAAGAGCCTCGTTCAG                         TCAGAAGCTGCAGAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG
genomic: CTGATGAGCGTTTTGATTCAGTTGCCTTACACCCCAAGAGCCTCGTTCAGgtaaaaaagg ... tacattacagTCAGAAGCTGCAAAGAAGATTCCCTTCATACTGGTCATAAACTTGCAG