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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTAGGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgttgtcatctatctctaacatcgttatcatatacacaacatatccatatgttgatgctgttttcataacttttgaag

Basic information

species Oryza sativa
transcript LOC_Os08g32630.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32630.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM5G851815_T01 (Zea mays), 5'ss of exon 15
TGCTTTAGGCTGGACCTGGAGTCATTCTTAACTGGTCAGGCCATTTTGTGATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgttgtcatctatctctaacatcg---ttatcatat---acacaacatatccatatgttgatgctgttttcataac-ttttgaag
        | |||||  |||||||| ||| | ||||||||||||||| |||||||||||||||| ||||||||||| |||| ||| || || ||||| ||||| || |||||||| || |  |||| |||    || |||  |   |||    | |  |  | ||   | |  |||| ||||  ||||||||
--------GTTGGACTGGGAGTCATCCTTGAGTGGTCAGGCCATTTTATGATGCTTGGTTACTACACATTCCTTTCTACCTATATTGATCCGATCCTGAGgtacaactgttgtcacctgtacctaatatcaaaattctcacttttgacatctaagagtctgacgtgcttccgatttttataatattttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22306320|gb|BQ907542.1|BQ907542
EST:     GACCCAATCCTCAG                         GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
genomic: GACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: gi|86883509|gb|CI338064.1|CI338064
EST:     ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG                         GCCTTGGGTT-AATCCTGGCCATTGAGGAACAAATATCAATGGAAACGATA
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: gi|88270992|gb|CI386847.1|CI386847
EST:     ATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG                         GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
genomic: ATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: gi|29642655|gb|CB647662.1|CB647662
EST:     ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG                         GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: gi|22306918|gb|BQ908140.1|BQ908140
EST:     GCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCC-ATCCTCAG                         GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
genomic: GCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: gi|88473610|gb|CI410881.1|CI410881
EST:     ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG                         GCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAACAAATATCAATGGAAACGATA
EST: gi|86826477|gb|CI364110.1|CI364110
EST:     ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAG                         GCCTTGGGTTGAATCCTTCCCATTGAGGAACAAAATATCAATTGAAACGAT
genomic: ATGCTTGGTTACTATACATTCCTTTCCACCTTTATAGACCCAATCCTCAGgtataattgt ... acttttgaagGCCTTGGGTTGAATCCTTGCCATTGAGGAAC-AAATATCAATGGAAACGAT