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TCTTTTGGAGCATTACAATGGTAAATGGCCCTTGTGGTTGAGTCCTCGCCAAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtccttgtgtcatagaatttactaattactattaattagtagctcttctccattgatcaaagtgtgaaaatcttctagtaccttctgattcga...
species | Oryza sativa |
transcript | LOC_Os08g19850.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTTGCCATCGATGAGACAEST: gi|8956844|gb|BE230647.1|BE230647
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACAEST: gi|88974311|gb|CI019984.1|CI019984
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCNATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACAEST: gi|58669943|gb|CK058629.1|CK058629
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTTGCCATCGATGAGACAEST: gi|33794572|gb|CF323173.1|CF323173
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACAEST: gi|24208843|gb|AU225870.1|AU225870
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACAEST: gi|86430588|gb|CI083011.1|CI083011
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGACGAGACAEST: gi|38479117|gb|CF963250.1|CF963250
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTTGCCATCGATGAGAEST: gi|29622569|gb|CB627580.1|CB627580
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGA
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTTGCCATCGATGAGACAEST: gi|88382609|gb|CI535817.1|CI535817
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: CTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACAEST: gi|8956784|gb|BE230587.1|BE230587
genomic: CTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACAEST: gi|88219267|gb|CI218827.1|CI218827
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACAEST: gi|88197260|gb|CI197110.1|CI197110
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACAEST: gi|58606862|gb|CK034895.1|CK034895
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCTATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTTGCCATCGATGAGACAEST: gi|88321457|gb|CI535409.1|CI535409
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: CAGTGGAATACGNTAAACAG GTCCTG-GCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACEST: gi|88974365|gb|CI020038.1|CI020038
genomic: CAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCC-GTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGAC
EST: AAGCCATTGTTTGCTCCATATC-TCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACAEST: gi|58674470|gb|CK063157.1|CK063157
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
EST: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAG GTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTTGCCATCGATGAGACA
genomic: AAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtc ... ctgtactcagGTCCGTGCTAGGATACATGAAGCTGGTTTTCATGTAGCCATCGATGAGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTTGGAGCATTACAATGGTAAATGGCCCTTGTGGTTGAGTCCTCGCCAAGCCATTGTTTGCTCCATATCTTCCAATTCAGTGGAATACGCTAAACAGgtaaaaggtccttgtgtcatagaatttactaattactattaattagtagctcttctccattgatcaaagtgtgaaaatcttctagtaccttctgattcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
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