Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTCGAAATCCATCTGTTCTGGGCTGGAAAGGGCACTTGTTGCATTCCTATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcctaatcattaaggtaacctcaagaaggattatattgccttctagtaaatgaaatctctgtttcag

Basic information

species Oryza sativa
transcript LOC_Os08g10320.3
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g10320.3 (Oryza sativa), 5'ss of exon 17
lower sequence: AT1G56120.1 (Arabidopsis thaliana), 5'ss of exon 17
TTCCTCGAAATCCATCTGTTCTGGGCTGGAAAGGGCACTTGTTGCATTCCTATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcctaatcattaaggtaacctcaagaa---ggattatattgccttctagtaaatgaaatctctgtttcag--------------
   |||||| ||||||| |||||||||||||| || || ||||| |||||||| |||||    || |||||||| ||  | ||  | ||    || ||| ||||  | ||   || |  ||   |         |  ||  | |  || |   ||   |  |   | || |||               
CATCTCGAAGTCCATCTTTTCTGGGCTGGAAAAGGAACATGTTGTATTCCTATCCAAGGGGCTTATGGGCCATTAATAGCGGCCGTCAGTGCGACACCAGgtaacacaaacggttgatatattttttttcctctgattttcactatctcccgatactagttagtgccgtgtcacatattcttgttcag

upper sequence: LOC_Os08g10320.3 (Oryza sativa), 5'ss of exon 17
lower sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
TTCCTCGAAATCCATCTGTTCTGGGCTGGAAAGGGCACTTGTTGCATTCCTATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcct----aatcattaaggta-acctcaagaaggattatattgcctt-ctagtaaatgaaatctctgtttcag------------------------------
|  || ||||| ||||||||||||||||| ||||| ||||| ||||| |||  | | ||||| || || ||||  || |||||  | ||  |   | || |||| ||     ||| ||     || |  |||   |  || | ||  |||  || ||   |    |  |   | ||                               
TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaaatgatagttatagaattcatataatataagatgtcctgactggtgcttcttttgccaactgcaactgaattggttgctgatttattttgctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29630668|gb|CB635677.1|CB635677
EST:     TATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAA                         ATTTTACTCCTACTGTGCGAGACGGTGTACCCAAA-GGCAAAGT
genomic: TATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcctaa ... tctgtttcagATTTTACTCCTACTGTGCGAAACGGTGTACCCAAAAGGAAAAGT
EST: gi|58688732|gb|CK077419.1|CK077419
EST:     TATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAA                         ATTTTACTCCTACTGTGCGAAACGGTGTACCCAAAAGGAAAAGTAAAGTAG
genomic: TATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcctaa ... tctgtttcagATTTTACTCCTACTGTGCGAAACGGTGTACCCAAAAGGAAAAGTAAAGTAG
EST: gi|29620863|gb|CB625874.1|CB625874
EST:     TATTCAAGGTTACTATGGGCCATTGATCTCAGCATTAAGCATCACTCCAA                         ATTTTACTCCTACTGTGCGAAACGGTGTACCCAAAAGGAAAAGTAAAGCAG
genomic: TATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcctaa ... tctgtttcagATTTTACTCCTACTGTGCGAAACGGTGTACCCAAAAGGAAAAGTAAAGTAG
EST: gi|29630198|gb|CB635207.1|CB635207
EST:     TATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAA                         ATTTTACTCCTACTGTGCGAAACGGTGTACCCAAAAGGAAAAGTAAAGTAG
genomic: TATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcctaa ... tctgtttcagATTTTACTCCTACTGTGCGAAACGGTGTACCCAAAAGGAAAAGTAAAGTAG
EST: gi|29623048|gb|CB628059.1|CB628059
EST:     TATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAA                         ATTTTACTCCTACTGTGCGAAACGGTGTACCCAAAAGGAAAAGTAAAGTAG
genomic: TATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcctaa ... tctgtttcagATTTTACTCCTACTGTGCGAAACGGTGTACCCAAAAGGAAAAGTAAAGTAG
EST: gi|29615848|gb|CB620860.1|CB620860
EST:     TATTCAAGGTTACTATGGGCCATTGATCTCAGCATTAAGCATCACTCCAA                         ATTTTACTCCTACTGTGCGAAACGGTGTACCCAAAAGGAAAAGTAAAGCAG
genomic: TATTCAAGGTTACTACGGGCCATTGATCTCAGCATTAAGCATCACTCCAAgtaagcctaa ... tctgtttcagATTTTACTCCTACTGTGCGAAACGGTGTACCCAAAAGGAAAAGTAAAGTAG