1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TTTCCTAAGAGGCCTTAACGTTTCTCTATCAACCGATGACCCTTTGCAAATTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatctccttcactctagctctttggatatgtttagattccacttagatctgcttaatttggattgcctgtcattcttggcag
species | Oryza sativa |
transcript | LOC_Os07g49270.1 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|29671781|gb|CB668056.1|CB668056
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|86481989|gb|CI124622.1|CI124622
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: GCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|86437389|gb|CI119111.1|CI119111
genomic: GCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|89169860|gb|CI110219.1|CI110219
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|33675288|gb|CF303527.1|CF303527
genomic: TGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|29663749|gb|CB660024.1|CB660024
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAEST: gi|29663750|gb|CB660025.1|CB660025
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGA
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|86478852|gb|CI121485.1|CI121485
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|8527210|gb|AU092025.1|AU092025
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCT-NTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|86437366|gb|CI119088.1|CI119088
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|88966319|gb|CI119454.1|CI119454
genomic: TGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: AATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|58695027|gb|CK083714.1|CK083714
genomic: AATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TTGGTTGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|218478545|gb|FG960299.1|FG960299
genomic: TTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGACTATAGCATCGCTGCTTCG CTGTGGAAGCTACGTTCATGCGCAC-TATGTGAAATTGCTAGGAATTCTGTEST: gi|163927650|gb|EG712446.1|EG712446
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCG-ACCTATGTGAAATTGCTAGGAATTCTGT
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|86481726|gb|CI124359.1|CI124359
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: ATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCGATGTGAAATTGCTAGGAATTCTGTGEST: gi|58593125|gb|CF991433.1|CF991433
genomic: ATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|86477298|gb|CI119931.1|CI119931
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: ATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|163926592|gb|EG713608.1|EG713608
genomic: ATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTGEST: gi|87027426|gb|CI272191.1|CI272191
genomic: TTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
EST: TCGCTGCTTCG CTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
genomic: TCGCTGCTTCGgtaactatct ... ttcttggcagCTGTGGAAGCTAAGTTCATGCGACCTATGTGAAATTGCTAGGAATTCTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCCTAAGAGGCCTTAACGTTTCTCTATCAACCGATGACCCTTTGCAAATTCACCTGACAAAAGAACCTTTGGTTGAAGAATATAGCATCGCTGCTTCGgtaactatctccttcactctagctctttggatatgtttagattccacttagatctgcttaatttggattgcctgtcattcttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT