1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcgatggtgtagacaactttgtacatatatatgtatatttaattagctgtctgtttagttattgttattctgttatgtttatggccttacggg...
species | Oryza sativa |
transcript | LOC_Os07g47530.2 |
intron # | 17 |
splice site | 5' |
intron type | U2 |
EST: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCG TTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGTEST: gi|58692536|gb|CK081223.1|CK081223
genomic: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcg ... ctggatgtagTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGT
EST: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCG TTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGTEST: gi|58690470|gb|CK079157.1|CK079157
genomic: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcg ... ctggatgtagTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGT
EST: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCG TTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGTEST: gi|29664460|gb|CB660735.1|CB660735
genomic: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcg ... ctggatgtagTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGT
EST: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCG TTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGTEST: gi|58690512|gb|CK079199.1|CK079199
genomic: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcg ... ctggatgtagTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGT
EST: GTGATGTTGAACTTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCG TTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACEST: gi|33675839|gb|CF304078.1|CF304078
genomic: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcg ... ctggatgtagTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGAC
EST: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCG TTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGTEST: gi|58658063|gb|CK046743.1|CK046743
genomic: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcg ... ctggatgtagTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGT
EST: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCG TTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGTEST: gi|33675419|gb|CF303658.1|CF303658
genomic: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcg ... ctggatgtagTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGT
EST: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCG TTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGTEST: gi|58660377|gb|CK049057.1|CK049057
genomic: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcg ... ctggatgtagTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGT
EST: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCG TTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGTEST: gi|33676430|gb|CF304669.1|CF304669
genomic: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcg ... ctggatgtagTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGT
EST: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCG TTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGT
genomic: GTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcg ... ctggatgtagTTCTTAACCCGCAATGGTCTGGAATGTGCTGACATAGAGACATCAGCATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAATTGGAACTCTCACAGTGGAAACAGCTATTAGACCGTGATGTTGAAATTCTGAAGGCAAAAGCTAACACGTCAAAGATCCAGTCGgtaagtatcgatggtgtagacaactttgtacatatatatgtatatttaattagctgtctgtttagttattgttattctgttatgtttatggccttacggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG