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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGAGGGAACTTGGGCTAGATCACCCTGATACAATGAAGAGTTATGGAGATCTTGCTGTGTTCTACTACCGTTTACAACATACAGAACTGGCTCTAAAgtaagttgactttatgtttttttttccctgaagatcatctatctatccataagaatgaacatgactatagttcccctttgaggtcttagttgaagtaata...

Basic information

species Oryza sativa
transcript LOC_Os07g23990.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g23990.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 19
ATGAGAGGGAACTTGGGCTAGATCACCCTGATACAATGAAGAGTTATGGAGATCTTGCTGTGTTCTACTACCGTTTACAACATACAGAACTGGCTCTAAAgtaagtt--gactttatgtttttttttccctgaagatcatctatctatccataagaatgaacatgactatagttcccctttgaggtcttagttgaagtaata
| ||||| ||  | || || ||||| |||||||| |||||||| ||||| ||||||||||| ||||| ||| |  | ||||| || || |||||||| ||||| |||  |   || ||   | |  |        |   |  ||   |   |||   | ||  |   | | |      |   |  |  | | | || |  ||
ACGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACCGAGCTGGCTCTGAAgtatgttttgctcttgtgcaatatagtgatgtctaacttttcatgagtttttaaagtttaatttagtttttgaattaatacaa--tacttgcttaattttta

upper sequence: LOC_Os07g23990.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GLYMA16G02770.1 (Glycine max), 5'ss of exon 19
ATGAGAGGGAACTTGGGCTAGATCACCCTGATACAATGAAGAGTTATGGAGATCTTGCTGTGTTCTACTACCGTTTACAACATACAGAACTGGCTCTAAAgtaagtt--gactttatgtttttttttccctgaagatcatctatctatccataagaatgaacatgactatagttcccctttgaggtcttagttgaagtaata
| ||||||||  | || || ||||| |||||||| |||||||| ||||| ||||||||||| ||||| ||| |  | ||||| ||||| |||||||| ||||| |||  |   || ||   | |  |     |  ||  |   |   |   |||   | ||  ||  | | |      | | |  |  | | | || |  ||
ACGAGAGGGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTTCAACACACAGAGCTGGCTCTGAAgtatgttttgctcttgtgcaatatagtgatgtataatttttcttgagtttttaaagtttaatttggtttttgaattaatataa--tacttgcttaattgtta

upper sequence: LOC_Os07g23990.2 (Oryza sativa), 5'ss of exon 17
lower sequence: AT1G01320.1 (Arabidopsis thaliana), 5'ss of exon 19
ATGAGAGGGAACTTGGGCTAGATCACCCTGATACAATGAAGAGTTATGGAGATCTTGCTGTGTTCTACTACCGTTTACAACATACAGAACTGGCTCTAAAgtaagttgactttatgtttttttttccctgaagatcatctatctatccataagaatgaacatgactatagttcccctttgaggtcttagttgaagtaata-------------
|||||||||||||||| || ||||| || |||||||||||||||||||| ||||||||||| ||||| ||  |  | || |||||||| |||||||| |||||||||    |     | ||  ||     |  |||       ||      |   |  | |||  |   ||  |  |      ||| |       ||  |             
ATGAGAGGGAACTTGGACTTGATCATCCAGATACAATGAAGAGTTATGGTGATCTTGCTGTCTTCTATTATAGGCTTCAGCATACAGAGCTGGCTCTCAAgtaagtt----tagcactcttgattttaaaagaatcgcgaggtta-----gatggtttaaatgtttgatgtctctttccatcatctaaacctggatatgattgtttttgttag

upper sequence: LOC_Os07g23990.2 (Oryza sativa), 5'ss of exon 17
lower sequence: Vv00s0388g00080.t01 (Vitis vinifera), 5'ss of exon 4
ATGAGAGGGAACTTGGGCTAGATCACCCTGATACAATGAAGAGTTATGGAGATCTTGCTGTGTTCTACTACCGTTTACAACATACAGAACTGGCTCTAAAgtaagttgactttatgtttttttttccctgaagatcatctatctatccataagaatgaacatgactatagttcccctttgaggtcttagttgaagtaata-
||||||| ||||| || || ||||| || || || |||||||||||||||||||||||||||||||| ||| |  | ||||| || ||||||||||| ||||| ||||   || |||  |    |         |||| ||| ||| |||||  ||           |  ||    ||| ||   | |  | |  |  |  
ATGAGAGAGAACTAGGACTTGATCATCCAGACACGATGAAGAGTTATGGAGATCTTGCTGTGTTCTATTACGGACTTCAACACACTGAACTGGCTCTCAAgtatgttggtcttgtgtaatgcactattgacttttcatgtat-tattcataaacatttgtgctttcttgcttgaaatttcagcagtcaagttatattgttt

upper sequence: LOC_Os07g23990.2 (Oryza sativa), 5'ss of exon 17
lower sequence: Vv15s0046g00740.t01 (Vitis vinifera), 5'ss of exon 19
ATGAGAGGGAACTTGGGCTAGATCACCCTGATACAATGAAGAGTTATGGAGATCTTGCTGTGTTCTACTACCGTTTACAACATACAGAACTGGCTCTAAAgtaagttgactttatgtttttttttccctgaagatcatctatctatccataagaatgaacatgactatagttcccctttgaggtcttagttg--aagtaata------
||||||| ||||| || || ||||| || || ||||||||||||||||||||||||||||||||||| ||| |  | ||||| |||||||||||||| ||||| ||||   || |||  |     | ||  |||   |  || |||   ||   || |||||   |    |||    ||||  | | ||  |  |||| |||      
ATGAGAGAGAACTAGGACTTGATCATCCAGACACAATGAAGAGTTATGGAGATCTTGCTGTGTTCTATTACAGACTTCAACACACAGAACTGGCTCTCAAgtatgttggtcttgtgtaatg----cactatagacttttcatgtat---tattcataaacatttgtgct-ttcttgcttgaaatttcagcagtcaagttatattgttt

upper sequence: LOC_Os07g23990.2 (Oryza sativa), 5'ss of exon 17
lower sequence: EFJ26734 (Selaginella moellendorffii), 5'ss of exon 18
ATGAGAGGGAACTTGGGCTAGATCACCCTGATACAATGAAGAGTTATGGAGATCTTGCTGTGTTCTACTACCGTTTACAACATACAGAACTGGCTCTAAAgtaagttgactttatgtttttttttccctgaagatcatctatctatccataagaatgaacatgactatagttcccctttgaggtcttagttgaagtaata
||||  | || |||||  | || || || ||||| |||||||| ||||||||||| ||||| || |||||||| || || ||||| ||||| ||||| ||||| |||   ||| || || |||||   ||| || | |     | |  | |                                                 
ATGAACGCGAGCTTGGCTTGGACCATCCGGATACCATGAAGAGCTATGGAGATCTGGCTGTCTTTTACTACCGGTTGCAGCATACCGAACTAGCTCTGAAgtacgttc-ttttgtgattctttttaattgatgaccttaaccttctttacag------------------------------------------------