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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCATATGCGTCTTAATGGAGCGTAGTGAACCAGAGCTTGCAGAGCCAATTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgattgtatacttattcatactcccaaattctacatttatgtttttattgaggtcaaggaccgtatagtacatatgaacatatttactgtgcat...

Basic information

species Oryza sativa
transcript LOC_Os06g48640.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g48640.3 (Oryza sativa), 5'ss of exon 17
lower sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 17
AATCATATGCGTCTTAATGGAGCGTAGTGAACCAGAGCTTGCAGAGCCAATTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgattgtatacttattcatactcccaaattctacatttatg------tttttattgaggtcaaggaccgtatagtacatatgaacat--atttactgtgcat------------------------------------------------------------
||| ||||      ||||||| || || ||  ||||| | | ||||||  |||  ||  |  | ||| | |  || || |||||||||||||||||||||||||   ||| || |    ||  ||  || |   || |  | | ||       ||| | || |  |||   | | | |   |  | |||| |   ||| |  |||  |                                                            
AATTATATATACACTAATGGACCGGAGCGAGTCAGAGTTGGGAGAGCCCCTTACACGACTTTTACCTCTCGGTCTGGGTCTTCTATATCTTGGAAAGCAGgtaaacagat-gtctggcaatctattgtctctgctttttgaatcatagattattttcttttcaattcattaatcttctttaatttctgaataacaattgatagtgagtagggttctgctattgttaaggtgtaatattcactctttacattgtgctttgttactgcag

upper sequence: LOC_Os06g48640.3 (Oryza sativa), 5'ss of exon 17
lower sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 17
AATCATATGCGTCTTAATGGAGCGTAGTGAACCAGAGCTTGCAGAGCCAATTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgattgtatacttattcatactcccaaattctacatttatg------tttttattgaggtcaaggaccgtatagtacatatgaacat--atttactgtgcat-----------------------------------------------------------
||| ||||      ||||||| || |||||  ||||| | | ||||||  |||  ||  |  | ||| | |  ||||| ||||||||||||||||||||||||| | ||| || |     |  ||  || |   || |  | ||||       ||| | || |  |||   | | | |   |  | |||| |   ||| |  |||                                                              
AATTATATATACACTAATGGACCGGAGTGAGTCAGAGTTGGGAGAGCCCCTTACACGACTTTTACCTCTCGGTCTTGGTCTTCTATATCTTGGAAAGCAGgtaaatagat-gtctggcagtctatcatctctgtttttttaattatagattattttcttttcacctcattaatcttctttaatttctgaataacaattgatagtggtagggttctgctattgtgaaggtgtaatactcactctttacattgtgctttgttactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58653587|gb|CK042267.1|CK042267
EST:     TTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAG                         GAAAGTGTGGAGGCGACTGCAGAGGTTTCTAAAACCTTTGATGAGAAGATA
genomic: TTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgat ... ctgttctcagGAAAGTGTGGAGGCGACTGCAGAGGTTTCTAAAACCTTTGATGAGAAGATA
EST: gi|29614662|gb|CB619675.1|CB619675
EST:     TTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAG                         GAAAGTGTGGAGGCGACTGCAGAGGTTTCTAAAACCTTTGATGAGAAGATA
genomic: TTATGCGCTTGCTTCCTGTTGCCCTTGGCCTTCTATATCTTGGAAAGCAGgtaatttgat ... ctgttctcagGAAAGTGTGGAGGCGACTGCAGAGGTTTCTAAAACCTTTGATGAGAAGATA