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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaacgtgtttttaccactcctttcgtccttgaaccttaaattactcaagcaactttgatttgaaatttgaagtatgaacctgtgaagaatgtt...

Basic information

species Oryza sativa
transcript LOC_Os06g45120.1
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 18
ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgta----aatctaacgtgtttttaccactcctttcgtcct-tgaaccttaaattactcaagcaactttgatttgaaatttgaagtatgaacctgtgaagaatgtt
|||||| || || || || ||||||||||||||||||||||||||||||||||| |||||| | |  || ||||||||||||    | | ||| |  |     |   |  |   ||  | |  |   || |  |   ||| ||  |  || | |   |||   | |          |   |  |
ATATGATAAATTTTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtagtgtaaggaatcag-gcagtttttggtgttttatttatactagaaaaaagaagaaaagtccatgtaatcattggcatctaggttc----aagttact

upper sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 18
ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgta----aatctaacgtgtttttaccactcctttcgtcct-tgaaccttaaattactcaagcaactttgatttgaaatttgaagtatgaacctgtgaagaatgtt
||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||| | |  || ||||||||||||      | ||| |  |     |   |  |   ||  | |  |  ||| |  |   ||| ||  |  || | |   |||   | |          |   |  |
ATATGACAAATTCTGCCCCTTCTACAAGTCTGTTTGGATGATGCGCAACATTATCCATTTCTACAATTTGGCAAATCAGgtatggtggtgtaaggaatcag-gcagtttttggtgttttatttatattagaaaaaagaagaaaagtccatgtaatcattggcatctaggttc----aagttact

upper sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 17
lower sequence: AT1G78900.2 (Arabidopsis thaliana), 5'ss of exon 18
ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaacgtgtttttaccactcctttcgtccttgaaccttaaattactcaagcaactttgatttgaaatttgaagtatgaacctgtgaagaatgtt
||||||||| |||||||| ||||||||||| || ||||||||||| |||||||| |||||| | |   |||| || |||||||||   | | | |||   ||  |  | |    | |    | |  | | |         | | |   |||    |   ||     ||   | |  |  
ATATGACAAATTCTGTCCTTTCTACAAGTCCGTGTGGATGATGCGTAACATTATCCATTTCTACAACCTAGCCAACCAGgtaaataagatgagatttatacatactatgctaagtggggattaaggtcaattggtttgtctaggt--aaaaacccattaattgttttggatacacag--

upper sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 17
lower sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 18
ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaacgtgtttttaccactcctttcgtccttgaaccttaaattactcaagcaactttgatttgaaatttgaagtat-gaacctgtgaagaatgtt
|||||||||||| ||||| || |||||||| |||||||||||| | ||||||||||||||| |||  || || |||||||||  ||| |  | |   |  |  ||||    |       |  |  |||  |||      | ||| |  ||   |     || | ||   |||| |     
ATATGACAAGTTTTGTCCCTTTTACAAGTCAGTTTGGATGATGAGGAACATTATTCATTTCTATAATTTGGCCAATCAGgtac-tcttatttttccctttctttcctgatatttcctctctatgtattcttcatttttttctgactcaaagggtatctgattggacaaatgaaaagaaaa

upper sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 17
lower sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 18
ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaacgtgtttttaccactcctttcgtccttgaaccttaaattactcaagcaactttgatttgaaatt-tgaagtatg---aacctgtgaagaatgtt
|||||| |||||||| || ||||||||||| ||||||||||||||||| ||||| |||||| |||  || || |||||||||      | ||   | |  | ||| || |  ||     ||     || |        ||||||  |    || | | || ||   |     |   |  ||| 
ATATGATAAGTTCTGCCCCTTCTACAAGTCGGTTTGGATGATGCGCAATATTATCCATTTCTATAATTTGGCCAATCAGgta----cgatgttcctctctctctctttccaccccccctcccccgttttcctttttctctttgacctattgttgtcatgtttgccaagatcattgtgtctgta

upper sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 17
lower sequence: PP1S8_312V6.1 (Physcomitrella patens), 5'ss of exon 18
ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgta--------aatctaacgtgttttt----accactcctttcgtcct--tgaaccttaaattactcaagcaactttgatttgaaatttgaagtatg-aacctgtgaagaatgtt----------------------------------------------------------------
 |||||||| ||||| ||||||||||||||||| ||||||||||| || ||| | || ||||| ||  | |||||||||||         | || ||  |||||||    |  | |  | |  ||||  |     || ||||  |  |  || ||   ||  |  |||||  | |  ||  | ||| || ||                                                                  
TTATGACAAATTCTGCCCATTCTACAAGTCTGTGTGGATGATGCGTAATATTGTCCACTTCAACACTCTTGCAAATCAGgtttgctcgttattccaaaatgtttttgtttattatttatcttttcctcctcttttttgaattgattcattaattt--gttaaatctttgagttgttcaaattttgatgattgggtggttgtatctcaactcgtatgtttacaaattccaaaactaatgagcgatgatttcatctgcag

upper sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 17
lower sequence: EFJ33015 (Selaginella moellendorffii), 5'ss of exon 17
ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaacgtgtttttaccactccttt-cgtccttgaaccttaaattactcaagcaactttgatttgaaatttgaagtatgaacctgtgaagaatgtt
||| || ||||| ||||| ||||||||||| |||||||||||||| |||||  ||||||||       |  | | |||||||        |   |   |   ||| ||  ||||||||||  || | || |||  |||                                          
ATACGATAAGTTTTGTCCGTTCTACAAGTCCGTTTGGATGATGCGAAACATCGTTCATTTCTGCGACCTGTCCACTCAGgta-------tgcactgccatacctctttcacgtccttgaaaatttactttctcttgcag-----------------------------------------

upper sequence: LOC_Os06g45120.1 (Oryza sativa), 5'ss of exon 17
lower sequence: EFJ30330 (Selaginella moellendorffii), 5'ss of exon 18
ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaacgtgtttttaccactccttt-cgtccttgaaccttaaattactcaagcaactttgatttgaaatttgaagtatgaacctgtgaagaatgtt
||| || ||||| ||||| ||||||||||| |||||||||||||| |||||  | ||||||       |  | | |||||||        |   |   |   ||| ||  ||||||||||  || | || |||  |||                                          
ATACGATAAGTTTTGTCCGTTCTACAAGTCCGTTTGGATGATGCGAAACATCGTCCATTTCTGCGACCTGTCCACTCAGgta-------tgcactgccatacctctttcacgtccttgaaattttactttctcttgcag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86430903|gb|CI083326.1|CI083326
EST:     ATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACCAAAAATAACATACAGTGTC
genomic: ATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|86261439|gb|CI017181.1|CI017181
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|86887418|gb|CI313321.1|CI313321
EST:     CAATACATTACCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|86834201|gb|CI343961.1|CI343961
EST:     TTCAAAACA-TAGCAAATCAG                         GCTGTGGAGCGTGCAGCCTAATGCTGATGGACAAAAAATAACATACAGTGT
genomic: TTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAG-CTAATGCTGATGGACAAAAAATAACATACAGTGT
EST: gi|218484409|gb|FG956802.1|FG956802
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29618245|gb|CB623257.1|CB623257
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGCGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29625786|gb|CB630797.1|CB630797
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGCGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|89178951|gb|CI043456.1|CI043456
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|86427003|gb|CI072100.1|CI072100
EST:     TGCGCAACATTATTCATTTCAATACATGAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: TGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|89178992|gb|CI043497.1|CI043497
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|50878549|gb|AF527710.1|AF527710
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|86903208|gb|CI313571.1|CI313571
EST:     TGGATGATGCGCAACA-TA-TCATTTCGATACATTAGCAAATCAG                         GCTGTGGAGCGGGCAGCTAATCCTGATGGGACAAAAAATAACATACAGTGT
genomic: TGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGAT-GGACAAAAAATAACATACAGTGT
EST: gi|88959689|gb|CI002299.1|CI002299
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29613337|gb|CB618350.1|CB618350
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGCGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|38477420|gb|CF961553.1|CF961553
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAGATCAG                         GCTGTGGAGCGCGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29617006|gb|CB622018.1|CB622018
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGCGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|116875538|gb|EC366046.1|EC366046
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGCGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29629621|gb|CB634630.1|CB634630
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGCGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|87040164|gb|CI193373.1|CI193373
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|86843741|gb|CI336576.1|CI336576
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACAGTACCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|88259203|gb|CI363496.1|CI363496
EST:     CATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|88376308|gb|CI533210.1|CI533210
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGGTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|4715550|gb|AU056666.1|AU056666
EST:     CTGTTTGGATGATGCGCAACNTTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATNACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29667460|gb|CB663735.1|CB663735
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|8858131|gb|AU095449.1|AU095449
EST:     CAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATNACATACAGTGTC
genomic: CAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29658784|gb|CB655059.1|CB655059
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|88998087|gb|CI037972.1|CI037972
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACNAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|88845187|gb|CI084112.1|CI084112
EST:     GTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: GTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|116875037|gb|EC365545.1|EC365545
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCG
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCG
EST: gi|86433282|gb|CI093625.1|CI093625
EST:     CAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|88977037|gb|CI024774.1|CI024774
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|33804195|gb|CF327972.1|CF327972
EST:     CTGTTTGGATGATGTGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|87039264|gb|CI193886.1|CI193886
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29630925|gb|CB635934.1|CB635934
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGCGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|86412469|gb|CI017337.1|CI017337
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29622588|gb|CB627599.1|CB627599
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGCGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|88906501|gb|CI375573.1|CI375573
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29656412|gb|CB652687.1|CB652687
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|88337198|gb|CI628284.1|CI628284
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29626983|gb|CB631994.1|CB631994
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGCGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|86261455|gb|CI017197.1|CI017197
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
EST: gi|29633886|gb|CB638895.1|CB638895
EST:     CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAG                         GCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC
genomic: CTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 57 (upstream exon), 73 (downstream exon)
Score: 81

ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaa ... tgtcttgtagGCTGTGGAGCGTGCAGCTAATGCTGATGGACAAAAAATAACATACAGTGTCATAAAGCATCGTATGGGTGATCTATTTTATCGCCTAGT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATGACAAGTTCTGTCCATTCTACAAGTCTGTTTGGATGATGCGCAACATTATTCATTTCAATACATTAGCAAATCAGgtaaatctaacgtgtttttaccactcctttcgtccttgaaccttaaattactcaagcaactttgatttgaaatttgaagtatgaacctgtgaagaatgtt

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