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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGTGGCAATCTCACCAAACCATGAGGTTGCAGCCATCTTTGCCGCGGCGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttcttggatcaaaccgtttctttgaactttttattcttcttggaagatcaaagtaatggtgttattcatgttttatttcag

Basic information

species Oryza sativa
transcript LOC_Os06g36090.2
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G366146_T01 (Zea mays), 5'ss of exon 17
GACGGTGGCAATCTCACCAAACCATGAGGTTGCAGCCATCTTTGCCGCGGCGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagtt--ttcttggatcaaaccgtttctttgaactttttattcttcttggaagatcaaagtaatggtgttattcatgt---tttatttcag
||| ||  ||||||| |||||||||||||||||| ||||||| ||||| || ||||||||  |||||||||| |||||||| || |||||||| ||||| || ||||  |||||  ||||  || || |  ||| | |||| |      |  || || |   | ||| |||| ||  | |    |||||||||
GACTGTCTCAATCTCCCCAAACCATGAGGTTGCATCCATCTTCGCCGCAGCTTTCTATTCTCTGTTCAACCTCTTCTCAGGCTTTTTCATTCCAAGACCGgttagttgtttcttcaatca--cctttaccgtgatccttttctgtaggattaaaaataatgcttatgttgttttttctctattcttatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643489|gb|CB648496.1|CB648496
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: gi|88675207|gb|CI727322.1|CI727322
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGTGGATCTGGTACTACTGGC
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGC
EST: gi|88671120|gb|CI725236.1|CI725236
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGTGGATCTGGTA
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTA
EST: gi|88674502|gb|CI728615.1|CI728615
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGTGGATCT
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCT
EST: gi|88668092|gb|CI722831.1|CI722831
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGAACA                         AGGATTCCCAAATGGTGG
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGG
EST: gi|29673479|gb|CB669754.1|CB669754
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: gi|88908493|gb|CI713052.1|CI713052
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATG
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATG
EST: gi|38470736|gb|CF954867.1|CF954867
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: gi|86260714|gb|CI000162.1|CI000162
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: gi|88574669|gb|CI666438.1|CI666438
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: gi|88904455|gb|CI711763.1|CI711763
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGTGGATCTG
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTG
EST: gi|157652524|gb|EX452158.1|EX452158
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGTGGATCTGGTAC
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTAC
EST: gi|88985544|gb|CI003020.1|CI003020
EST:     CGTTCTATTCCTTGTCCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGAGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
EST: gi|33682388|gb|CF310627.1|CF310627
EST:     CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCA                         AGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG
genomic: CGTTCTATTCCTTGTTCAACCTATTCTCAGGATTCTTCATTCCGAGACCAgtgagttttc ... tttatttcagAGGATTCCCAAATGGTGGATCTGGTACTACTGGCTTTGCCCATTGGCATGG